1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00000903.41

Cpa|evm.model.tig00000903.41


Description : Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN2 regulatory component


Gene families : OG0003234 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003234_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000903.41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00089p00034850 evm_27.TU.AmTr_v1... Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
AT2G32730 No alias 26S proteasome regulatory complex, non-ATPase... 0.02 OrthoFinder output from all 47 species
Ala_g14984 No alias regulatory component *(RPN2) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Als_g45676 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g11728 No alias regulatory component *(RPN2) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Ceric.24G027100.1 Ceric.24G027100 regulatory component *(RPN2) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Cre17.g727950 No alias Protein degradation.26S proteasome.regulatory... 0.05 OrthoFinder output from all 47 species
Dcu_g07138 No alias regulatory component *(RPN2) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
GSVIVT01003914001 No alias Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Gb_01242 No alias regulatory component RPN2 of 26S proteasome 0.02 OrthoFinder output from all 47 species
LOC_Os04g51910.1 LOC_Os04g51910 regulatory component RPN2 of 26S proteasome 0.02 OrthoFinder output from all 47 species
LOC_Os08g12820.1 LOC_Os08g12820 regulatory component RPN2 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Len_g16764 No alias regulatory component *(RPN2) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Lfl_g02285 No alias regulatory component *(RPN2) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
MA_10430856g0020 No alias regulatory component RPN2 of 26S proteasome 0.01 OrthoFinder output from all 47 species
Mp6g04700.1 No alias regulatory component RPN2 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Nbi_g02462 No alias regulatory component *(RPN2) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ore_g08595 No alias regulatory component *(RPN2) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Pir_g15070 No alias regulatory component *(RPN2) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004939 No alias regulatory component *(RPN2) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Sam_g09047 No alias regulatory component *(RPN2) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Smo167705 No alias Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Solyc09g091750.3.1 Solyc09g091750 regulatory component RPN2 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Spa_g17542 No alias regulatory component *(RPN2) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Tin_g12787 No alias regulatory component *(RPN2) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Zm00001e006994_P001 Zm00001e006994 regulatory component RPN2 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Zm00001e041606_P001 Zm00001e041606 regulatory component RPN2 of 26S proteasome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
CC GO:0030176 obsolete integral component of endoplasmic reticulum membrane IEP HCCA
BP GO:0042157 lipoprotein metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002015 Proteasome/cyclosome_rpt 462 495
No external refs found!