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  5. Cpa|evm.model.tig00000865.28

Cpa|evm.model.tig00000865.28 (emb1507)


Aliases : emb1507

Description : DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana


Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000865.28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00114710 emb1507,... RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
AMTR_s00077p00041680 emb1507,... DExH-box ATP-dependent RNA helicase DExH12... 0.02 OrthoFinder output from all 47 species
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.02 OrthoFinder output from all 47 species
Adi_g117139 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g29910 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14557 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08117 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09018 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z134800.1 Ceric.1Z134800 not classified & original description: pacid=50597112... 0.01 OrthoFinder output from all 47 species
Ceric.1Z263400.1 Ceric.1Z263400 RNA helicase *(Brr2) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.31G022500.1 emb1507, Ceric.31G022500 RNA helicase *(Brr2) & original description:... 0.02 OrthoFinder output from all 47 species
Cre17.g744147 emb1507 RNA processing.RNA splicing.spliceosome... 0.08 OrthoFinder output from all 47 species
Dac_g02389 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g12553 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12406 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03005 No alias RNA helicase *(Brr2) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 OrthoFinder output from all 47 species
GSVIVT01010769001 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.06 OrthoFinder output from all 47 species
Gb_27895 emb1507 RNA helicase (Brr2) 0.02 OrthoFinder output from all 47 species
LOC_Os02g01740.1 emb1507, LOC_Os02g01740 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species
Len_g21125 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09106 No alias RNA helicase *(Brr2) & original description: none 0.01 OrthoFinder output from all 47 species
MA_10434991g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
MA_8113344g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
MA_81219g0020 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.05 OrthoFinder output from all 47 species
MA_81219g0030 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.05 OrthoFinder output from all 47 species
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 OrthoFinder output from all 47 species
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
Mp1g06890.1 emb1507 RNA helicase (Brr2) 0.06 OrthoFinder output from all 47 species
Ore_g25813 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09832 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g00866 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015385 emb1507 RNA helicase *(Brr2) & original description: CDS=1-6507 0.01 OrthoFinder output from all 47 species
Smo144158 emb1507 RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
Smo178863 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 OrthoFinder output from all 47 species
Smo410613 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
Solyc06g082100.4.1 emb1507, Solyc06g082100 RNA helicase (Brr2) 0.02 OrthoFinder output from all 47 species
Spa_g52342 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07743 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g16674 No alias RNA helicase *(Brr2) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e035676_P001 emb1507, Zm00001e035676 RNA helicase (Brr2) 0.04 OrthoFinder output from all 47 species
Zm00001e038727_P001 Zm00001e038727 DExH-box ATP-dependent RNA helicase DExH14... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 146 238
IPR011545 DEAD/DEAH_box_helicase_dom 2 107
IPR011545 DEAD/DEAH_box_helicase_dom 657 780
IPR004179 Sec63-dom 332 630
No external refs found!