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  5. Cpa|evm.model.tig00000863.17

Cpa|evm.model.tig00000863.17 (SMU1)


Aliases : SMU1

Description : Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana


Gene families : OG0006796 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006796_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000863.17
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Aop_g11172 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Ceric.12G061400.1 SMU1, Ceric.12G061400 component *(SMU1) of SMU splicing factor complex &... 0.03 OrthoFinder output from all 47 species
Cre01.g020400 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.05 OrthoFinder output from all 47 species
Dac_g02798 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.01 OrthoFinder output from all 47 species
Dcu_g01516 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.01 OrthoFinder output from all 47 species
LOC_Os01g21940.1 SMU1, LOC_Os01g21940 Suppressor of mec-8 and unc-52 protein homolog 1... 0.01 OrthoFinder output from all 47 species
Len_g02315 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.01 OrthoFinder output from all 47 species
Mp4g04520.1 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.02 OrthoFinder output from all 47 species
Pir_g07643 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Solyc06g064830.3.1 SMU1, Solyc06g064830 Suppressor of mec-8 and unc-52 protein homolog 1... 0.02 OrthoFinder output from all 47 species
Spa_g47371 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.01 OrthoFinder output from all 47 species
Tin_g08981 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.01 OrthoFinder output from all 47 species
Zm00001e017539_P002 SMU1, Zm00001e017539 Suppressor of mec-8 and unc-52 protein homolog 1... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 268 296
IPR001680 WD40_repeat 301 338
IPR001680 WD40_repeat 344 381
IPR001680 WD40_repeat 226 247
No external refs found!