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  5. Cpa|evm.model.tig00000808.48

Cpa|evm.model.tig00000808.48 (UVH1, ATRAD1, RAD1)


Aliases : UVH1, ATRAD1, RAD1

Description : DNA repair endonuclease UVH1 OS=Arabidopsis thaliana


Gene families : OG0005132 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005132_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000808.48
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Ala_g27811 UVH1, ATRAD1, RAD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17423 UVH1, ATRAD1, RAD1 component *(XPF) of DNA repair endonuclease complex &... 0.02 OrthoFinder output from all 47 species
Nbi_g18213 UVH1, ATRAD1, RAD1 component *(XPF) of DNA repair endonuclease complex &... 0.01 OrthoFinder output from all 47 species
Smo90549 UVH1, ATRAD1, RAD1 DNA repair endonuclease UVH1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Tin_g21722 UVH1, ATRAD1, RAD1 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR006166 ERCC4_domain 698 747
No external refs found!