Description : 26S proteasome non-ATPase regulatory subunit 13 homolog B OS=Arabidopsis thaliana
Gene families : OG0004118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cpa|evm.model.tig00000802.47 | |
Cluster | HCCA: Cluster_85 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G19006 | No alias | Proteasome component (PCI) domain protein | 0.06 | OrthoFinder output from all 47 species | |
AT5G45620 | No alias | Proteasome component (PCI) domain protein | 0.04 | OrthoFinder output from all 47 species | |
Adi_g013038 | No alias | regulatory component *(RPN9) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Als_g44889 | No alias | regulatory component *(RPN9) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.29G058600.1 | Ceric.29G058600 | regulatory component *(RPN9) of 26S proteasome &... | 0.05 | OrthoFinder output from all 47 species | |
Cre17.g734516 | No alias | Protein degradation.26S proteasome.regulatory... | 0.19 | OrthoFinder output from all 47 species | |
Dac_g00791 | No alias | regulatory component *(RPN9) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g01140 | No alias | regulatory component *(RPN9) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01013003001 | No alias | Protein degradation.26S proteasome.regulatory... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01013005001 | No alias | Protein degradation.26S proteasome.regulatory... | 0.06 | OrthoFinder output from all 47 species | |
Gb_08030 | No alias | regulatory component RPN9 of 26S proteasome | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os01g32800.1 | LOC_Os01g32800 | regulatory component RPN9 of 26S proteasome | 0.08 | OrthoFinder output from all 47 species | |
LOC_Os03g11570.1 | LOC_Os03g11570 | regulatory component RPN9 of 26S proteasome | 0.13 | OrthoFinder output from all 47 species | |
Len_g01149 | No alias | regulatory component *(RPN9) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Mp8g12870.1 | No alias | regulatory component RPN9 of 26S proteasome | 0.08 | OrthoFinder output from all 47 species | |
Msp_g01539 | No alias | regulatory component *(RPN9) of 26S proteasome &... | 0.01 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0152.g023481 | No alias | regulatory component *(RPN9) of 26S proteasome &... | 0.01 | OrthoFinder output from all 47 species | |
Sam_g04200 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Sam_g12885 | No alias | regulatory component *(RPN9) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g27540 | No alias | regulatory component *(RPN9) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Smo266778 | No alias | Protein degradation.26S proteasome.regulatory... | 0.04 | OrthoFinder output from all 47 species | |
Solyc05g053140.3.1 | Solyc05g053140 | regulatory component RPN9 of 26S proteasome | 0.07 | OrthoFinder output from all 47 species | |
Solyc09g090720.3.1 | Solyc09g090720 | regulatory component RPN9 of 26S proteasome | 0.08 | OrthoFinder output from all 47 species | |
Tin_g00809 | No alias | regulatory component *(RPN9) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e002491_P003 | Zm00001e002491 | regulatory component RPN9 of 26S proteasome | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e013004_P001 | Zm00001e013004 | regulatory component RPN9 of 26S proteasome | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000151 | ubiquitin ligase complex | IEP | HCCA |
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
CC | GO:0000502 | proteasome complex | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005839 | proteasome core complex | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006810 | transport | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008233 | peptidase activity | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0009894 | regulation of catabolic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
CC | GO:0030117 | membrane coat | IEP | HCCA |
CC | GO:0030118 | clathrin coat | IEP | HCCA |
CC | GO:0030120 | vesicle coat | IEP | HCCA |
CC | GO:0030125 | clathrin vesicle coat | IEP | HCCA |
CC | GO:0030126 | COPI vesicle coat | IEP | HCCA |
CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
CC | GO:0030130 | clathrin coat of trans-Golgi network vesicle | IEP | HCCA |
CC | GO:0030132 | clathrin coat of coated pit | IEP | HCCA |
MF | GO:0030234 | enzyme regulator activity | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
MF | GO:0034450 | ubiquitin-ubiquitin ligase activity | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0036211 | protein modification process | IEP | HCCA |
BP | GO:0042176 | regulation of protein catabolic process | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
BP | GO:0051179 | localization | IEP | HCCA |
BP | GO:0051234 | establishment of localization | IEP | HCCA |
BP | GO:0051246 | regulation of protein metabolic process | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
MF | GO:0061630 | ubiquitin protein ligase activity | IEP | HCCA |
MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | HCCA |
MF | GO:0070003 | threonine-type peptidase activity | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0098772 | molecular function regulator activity | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
CC | GO:0098797 | plasma membrane protein complex | IEP | HCCA |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
CC | GO:1905368 | peptidase complex | IEP | HCCA |
CC | GO:1905369 | endopeptidase complex | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |