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  5. Cpa|evm.model.tig00000718.71

Cpa|evm.model.tig00000718.71


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).snRNP40/U5-40kDa snRNP component


Gene families : OG0006001 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006001_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000718.71
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00161070 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Aob_g07188 No alias protein factor *(U5-40kDa/snRNP40) of MAC... 0.02 OrthoFinder output from all 47 species
Aop_g02816 No alias protein factor *(U5-40kDa/snRNP40) of MAC... 0.02 OrthoFinder output from all 47 species
Cre06.g255400 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Ehy_g01105 No alias protein factor *(U5-40kDa/snRNP40) of MAC... 0.01 OrthoFinder output from all 47 species
GSVIVT01038180001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Len_g13799 No alias protein factor *(U5-40kDa/snRNP40) of MAC... 0.01 OrthoFinder output from all 47 species
MA_10427747g0010 No alias protein factor U5-40kDa/snRNP40 of U5 small nuclear... 0.01 OrthoFinder output from all 47 species
Mp3g19750.1 No alias protein factor U5-40kDa/snRNP40 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Solyc03g059100.3.1 Solyc03g059100 protein factor U5-40kDa/snRNP40 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 190 227
IPR001680 WD40_repeat 47 82
IPR001680 WD40_repeat 153 185
IPR001680 WD40_repeat 237 276
IPR001680 WD40_repeat 91 125
No external refs found!