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  5. Cpa|evm.model.tig00000704.48

Cpa|evm.model.tig00000704.48 (EMB251, RFC3, EMB161, EMB2775)


Aliases : EMB251, RFC3, EMB161, EMB2775

Description : Cell cycle.interphase.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp loader complex.RFC3 component


Gene families : OG0003475 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003475_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000704.48
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT5G27740 EMB251, RFC3,... ATPase family associated with various cellular activities (AAA) 0.03 OrthoFinder output from all 47 species
Adi_g001965 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.01 OrthoFinder output from all 47 species
Ala_g08186 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.02 OrthoFinder output from all 47 species
Aop_g01202 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.01 OrthoFinder output from all 47 species
Cba_g02498 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.01 OrthoFinder output from all 47 species
Cre16.g679950 EMB251, RFC3,... Cell cycle.interphase.DNA... 0.06 OrthoFinder output from all 47 species
Dde_g00472 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.01 OrthoFinder output from all 47 species
GSVIVT01022436001 EMB251, RFC3,... Cell cycle.interphase.DNA... 0.05 OrthoFinder output from all 47 species
Gb_39448 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.03 OrthoFinder output from all 47 species
LOC_Os03g57870.1 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.05 OrthoFinder output from all 47 species
Len_g15759 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.02 OrthoFinder output from all 47 species
MA_10426511g0010 EMB251, RFC3,... Replication factor C subunit 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_168293g0010 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.04 OrthoFinder output from all 47 species
Mp6g16440.1 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.02 OrthoFinder output from all 47 species
Nbi_g00550 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.02 OrthoFinder output from all 47 species
Ore_g03221 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.01 OrthoFinder output from all 47 species
Smo121188 EMB251, RFC3,... Cell cycle.interphase.DNA... 0.01 OrthoFinder output from all 47 species
Solyc01g020440.3.1 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.03 OrthoFinder output from all 47 species
Tin_g00584 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e005947_P001 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!