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  5. Cpa|evm.model.tig00000444.11

Cpa|evm.model.tig00000444.11


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIa basal transcription factor complex.small subunit


Gene families : OG0001736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000444.11
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00259390 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Dcu_g15705 No alias small subunit of TFIIa basal transcription factor... 0.02 OrthoFinder output from all 47 species
Mp8g03150.1 No alias small subunit of TFIIa basal transcription factor complex 0.02 OrthoFinder output from all 47 species
Ppi_g00333 No alias small subunit of TFIIa basal transcription factor... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005672 transcription factor TFIIA complex IEA Interproscan
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015872 TFIIA_gsu_N 8 51
IPR015871 TFIIA_gsu_C 61 103
No external refs found!