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  5. Cpa|evm.model.tig00000342.20

Cpa|evm.model.tig00000342.20


Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.CCR4 deadenylase component


Gene families : OG0002208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000342.20

Target Alias Description ECC score Gene Family Method Actions
AT3G58560 No alias DNAse I-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT3G58580 No alias DNAse I-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g059767 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Aev_g34399 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Als_g15695 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species
Cba_g12612 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species
Cre11.g475900 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
GSVIVT01033442001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.01 OrthoFinder output from all 47 species
Gb_27365 No alias deadenylase component CCR4 of CCR4-NOT complex 0.01 OrthoFinder output from all 47 species
Lfl_g06181 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species
Ore_g12135 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g00646 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ppi_g03915 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013823 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species
Sam_g16844 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species
Solyc10g078950.2.1 Solyc10g078950 deadenylase component CCR4 of CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Spa_g26860 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR031615 Zfn-C6H2 102 156
IPR005135 Endo/exonuclease/phosphatase 282 397
No external refs found!