Cpa|evm.model.tig00000254.50

Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor

Gene families : OG0002885 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002885_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00000254.50
Cluster	HCCA: Cluster_89

Target	Alias	Description	ECC score	Gene Family Method
Ala_g08533	No alias	mTERF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0022.g015943	No alias	mTERF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.38G044000.1	Ceric.38G044000	mTERF-type transcription factor & original description:...	0.01	OrthoFinder output from all 47 species
Dac_g12581	No alias	mTERF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g01666	No alias	mTERF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Len_g15528	No alias	mTERF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Mp3g07120.1	No alias	transcription factor (mTERF)	0.01	OrthoFinder output from all 47 species
Sam_g12241	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g15516	No alias	mTERF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	215	287
IPR003690	MTERF	410	482

External Links

No external refs found!