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  5. Cpa|evm.model.tig00000219.40

Cpa|evm.model.tig00000219.40 (ABO1, ELO2)


Aliases : ABO1, ELO2

Description : Elongator complex protein 1 OS=Arabidopsis thaliana


Gene families : OG0006371 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006371_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000219.40
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT5G13680 ABO1, ELO2 IKI3 family protein 0.02 OrthoFinder output from all 47 species
Aev_g35033 ABO1, ELO2 component *(ELP1) of ELONGATOR transcription elongation... 0.02 OrthoFinder output from all 47 species
Aob_g11767 ABO1, ELO2 component *(ELP1) of ELONGATOR transcription elongation... 0.01 OrthoFinder output from all 47 species
Cba_g12219 ABO1, ELO2 component *(ELP1) of ELONGATOR transcription elongation... 0.01 OrthoFinder output from all 47 species
Cre08.g372500 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Dcu_g09746 ABO1, ELO2 component *(ELP1) of ELONGATOR transcription elongation... 0.02 OrthoFinder output from all 47 species
GSVIVT01016590001 ABO1, ELO2 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Gb_20472 ABO1, ELO2 component ELP1 of ELONGATOR transcription elongation complex 0.01 OrthoFinder output from all 47 species
LOC_Os07g37640.1 ABO1, ELO2,... component ELP1 of ELONGATOR transcription elongation complex 0.01 OrthoFinder output from all 47 species
Mp2g09110.1 ABO1, ELO2 component ELP1 of ELONGATOR transcription elongation complex 0.02 OrthoFinder output from all 47 species
Nbi_g04458 ABO1, ELO2 component *(ELP1) of ELONGATOR transcription elongation... 0.02 OrthoFinder output from all 47 species
Sam_g08112 No alias component *(ELP1) of ELONGATOR transcription elongation... 0.02 OrthoFinder output from all 47 species
Solyc05g054630.4.1 ABO1, ELO2,... component ELP1 of ELONGATOR transcription elongation complex 0.02 OrthoFinder output from all 47 species
Zm00001e008063_P001 ABO1, ELO2,... component ELP1 of ELONGATOR transcription elongation complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0002098 tRNA wobble uridine modification IEA Interproscan
CC GO:0033588 elongator holoenzyme complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006849 Elp1 707 868
IPR006849 Elp1 56 151
IPR006849 Elp1 166 428
IPR006849 Elp1 526 703
No external refs found!