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  5. Cpa|evm.model.tig00000144.81

Cpa|evm.model.tig00000144.81 (NEDD1)


Aliases : NEDD1

Description : Protein NEDD1 OS=Arabidopsis thaliana


Gene families : OG0003254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003254_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000144.81
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT5G05970 NEDD1 Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g20113 NEDD1 regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.02 OrthoFinder output from all 47 species
Cre13.g565150 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os09g09470.1 NEDD1, LOC_Os09g09470 regulatory component GCP-WD/NEDD1 of gamma-Tubulin ring... 0.01 OrthoFinder output from all 47 species
Sam_g25601 No alias regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.01 OrthoFinder output from all 47 species
Solyc03g079920.3.1 NEDD1, Solyc03g079920 regulatory component GCP-WD/NEDD1 of gamma-Tubulin ring... 0.01 OrthoFinder output from all 47 species
Zm00001e009423_P002 NEDD1, Zm00001e009423 regulatory component GCP-WD/NEDD1 of gamma-Tubulin ring... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004797 thymidine kinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 94 127
IPR001680 WD40_repeat 135 161
No external refs found!