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  5. Cpa|evm.model.tig00000123.14

Cpa|evm.model.tig00000123.14


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS16 component


Gene families : OG0002224 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002224_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000123.14
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00161540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
AMTR_s00046p00076360 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder output from all 47 species
AT2G09990 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.22 OrthoFinder output from all 47 species
Adi_g074671 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Adi_g093268 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g125896 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Als_g36414 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Als_g60143 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g64161 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g00146 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Aop_g19106 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g22405 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s0018.g014901 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0041.g026702 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cba_g68462 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.05G019700.1 Ceric.05G019700 component *(uS9) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ceric.19G055700.1 Ceric.19G055700 component *(uS9) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Cre13.g573351 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 OrthoFinder output from all 47 species
Dac_g12959 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.24 OrthoFinder output from all 47 species
Dde_g28042 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01017923001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.31 OrthoFinder output from all 47 species
GSVIVT01031714001 No alias 40S ribosomal protein S16-3 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Gb_05712 No alias component RPS16 of SSU proteome 0.21 OrthoFinder output from all 47 species
Gb_29914 No alias component RPS16 of SSU proteome 0.15 OrthoFinder output from all 47 species
LOC_Os11g03400.1 LOC_Os11g03400 component RPS16 of SSU proteome 0.1 OrthoFinder output from all 47 species
LOC_Os12g03090.1 LOC_Os12g03090 component RPS16 of SSU proteome 0.11 OrthoFinder output from all 47 species
Len_g13370 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Len_g20675 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Len_g55652 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Len_g57864 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
MA_2656g0010 No alias 40S ribosomal protein S16 OS=Gossypium hirsutum... 0.13 OrthoFinder output from all 47 species
MA_32670g0010 No alias component RPS16 of SSU proteome 0.21 OrthoFinder output from all 47 species
Mp1g07720.1 No alias component RPS16 of SSU proteome 0.17 OrthoFinder output from all 47 species
Mp1g14290.1 No alias component RPS16 of SSU proteome 0.38 OrthoFinder output from all 47 species
Msp_g00365 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Msp_g36729 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Msp_g41319 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.19 OrthoFinder output from all 47 species
Pir_g06133 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g56340 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c19_22410V3.1 Pp3c19_22410 Ribosomal protein S5 domain 2-like superfamily protein 0.2 OrthoFinder output from all 47 species
Pp3c21_20630V3.1 Pp3c21_20630 Ribosomal protein S5 domain 2-like superfamily protein 0.2 OrthoFinder output from all 47 species
Pp3c9_4180V3.1 Pp3c9_4180 Ribosomal protein S5 domain 2-like superfamily protein 0.12 OrthoFinder output from all 47 species
Ppi_g23947 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ppi_g33948 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g19273 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.23 OrthoFinder output from all 47 species
Sam_g20169 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo138369 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder output from all 47 species
Solyc01g068530.3.1 Solyc01g068530 component RPS16 of SSU proteome 0.29 OrthoFinder output from all 47 species
Solyc04g026100.1.1 Solyc04g026100 component RPS16 of SSU proteome 0.35 OrthoFinder output from all 47 species
Solyc05g005690.1.1 Solyc05g005690 component RPS16 of SSU proteome 0.28 OrthoFinder output from all 47 species
Spa_g11660 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.23 OrthoFinder output from all 47 species
Spa_g36215 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Tin_g12571 No alias component *(uS9) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Zm00001e009230_P001 Zm00001e009230 component RPS16 of SSU proteome 0.07 OrthoFinder output from all 47 species
Zm00001e020865_P003 Zm00001e020865 component RPS16 of SSU proteome 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 9 125
No external refs found!