1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g33570

Pnu_g33570 (TMO3, CRF2)


Aliases : TMO3, CRF2

Description : not classified & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g33570
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00185480 ERF-1, ATERF-1,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AT1G22985 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G71520 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G31060 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g09757 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ala_g01005 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ala_g10933 TINY2 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g07122 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aob_g18172 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g42816 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g62836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g70736 DREB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07735.t1 DREB2A, DREB2,... subgroup ERF-IV/DREB2 transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene63782.t1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g13419 CRF3 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G005300.1 RAP2.12, Ceric.10G005300 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Ceric.20G036000.1 ATERF8, ATERF-8,... subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.33G045200.1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g37743 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dcu_g02635 TINY2 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g17593 CRF3 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22327 ERF72, EBP, ATEBP, RAP2.3 transcription factor component *(HRE/RAP2.12) of... 0.04 OrthoFinder output from all 47 species
Dde_g38897 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01023 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ehy_g03378 ATERF8, ATERF-8, ERF8 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g05355 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ehy_g07535 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g10951 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
GSVIVT01016684001 RAP2.12 Ethylene-responsive transcription factor RAP2-12... 0.02 OrthoFinder output from all 47 species
LOC_Os02g06330.1 ATERF4, RAP2.5,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g43940.1 ERF38, ATERF38,... transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
LOC_Os04g46440.1 ERF38, ATERF38,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os08g35240.1 LOC_Os08g35240 Ethylene-responsive transcription factor ERF017... 0.02 OrthoFinder output from all 47 species
LOC_Os09g13940.2 LOC_Os09g13940 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os09g39810.1 LOC_Os09g39810 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os10g41130.1 LOC_Os10g41130 transcription factor (DREB) 0.04 OrthoFinder output from all 47 species
LOC_Os10g41330.1 ERF-6-6, ERF6,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os11g06770.2 ERF110, LOC_Os11g06770 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Len_g16168 TINY2 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Len_g35061 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
MA_10432800g0010 No alias transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
MA_28894g0010 ERF7, ATERF7, ATERF-7 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_502153g0010 ATERF-9, ERF9, ATERF9 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
MA_99821g0010 TMO3, CRF2 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Mp1g20040.1 ATERF4, RAP2.5,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Mp7g09350.1 ERF-1, ATERF-1 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Ore_g03958 TINY2 subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g15422 TINY2 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ore_g28637 ATERF-9, ERF9, ATERF9 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pir_g09597 CRF4 subgroup ERF-VI transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55355 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g63080 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g16459 No alias subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g090560.4.1 Solyc01g090560 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Solyc01g108240.3.1 RRTF1, Solyc01g108240 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc05g013540.1.1 DRN-LIKE, ESR2,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc10g050960.3.1 RRTF1, Solyc10g050960 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc11g006050.1.1 ERF1, ATERF1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc11g042560.1.1 Solyc11g042560 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Spa_g09063 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g15143 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Zm00001e023686_P001 Zm00001e023686 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e023816_P001 Zm00001e023816 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 18 68
No external refs found!