LOC_Os01g21990 (Os01g0323300)


Aliases : Os01g0323300

Description : 27.1.10.2.2 RNA.processing.plastidial RNA.splicing.CAF2 Promotes the splicing of chloroplast group II introns. CAF2


Gene families : OG_01_0001018 (Gene family) Phylogenetic Tree(s): OG0001018_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os01g21990
Cluster HCCA cluster: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AT1G23400 CAF2, ATCAF2 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.02 Gene family
AT2G20020 ATCAF1, CAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.06 Gene family
GSVIVT01015331001 No alias 35.2 not assigned.unknown Promotes the splicing of... 0.02 Gene family
MA_757065g0010 No alias 27.1.10.2.2 RNA.processing.plastidial RNA.splicing.CAF2... 0.02 Gene family
Solyc05g018233.1.1 Solyc05g018233.1 35.2 not assigned.unknown Promotes the splicing of... 0.04 Gene family
Zm00001d019573 GRMZM2G173923,... 35.2 not assigned.unknown Promotes the splicing of... 0.04 Gene family
Zm00001d040696 No alias 27.1.10.2.2 RNA.processing.plastidial RNA.splicing.CAF2... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 230 313
IPR001890 RNA-binding_CRM 348 431
No external refs found!