ATCG00280 (PSBC)

Aliases : PSBC

Description : photosystem II reaction center protein C

Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00280
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s01196p00010070	PSBC,...	Photosystem II CP43 reaction center protein OS=Carica papaya	0.12	OrthoFinder output from all 47 species
AMTR_s04036p00005710	evm_27.TU.AmTr_v1...	Photosystem II CP43 reaction center protein...	0.12	OrthoFinder output from all 47 species
Aev_g04878	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.4	OrthoFinder output from all 47 species
Als_g01018	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.12	OrthoFinder output from all 47 species
Aob_g06735	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.16	OrthoFinder output from all 47 species
Cba_g32229	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.05	OrthoFinder output from all 47 species
Ceric.02G013100.1	PSBC, Ceric.02G013100	component *(PsbC/CP43) of PS-II reaction center complex...	0.24	OrthoFinder output from all 47 species
Ceric.07G101200.1	PSBC, Ceric.07G101200	not classified & original description: pacid=50626880...	0.04	OrthoFinder output from all 47 species
Ceric.12G058500.1	PSBC, Ceric.12G058500	not classified & original description: pacid=50601680...	0.2	OrthoFinder output from all 47 species
Ceric.12G087100.1	PSBC, Ceric.12G087100	not classified & original description: pacid=50602384...	0.2	OrthoFinder output from all 47 species
Ceric.1Z161200.1	PSBC, Ceric.1Z161200	component *(PsbC/CP43) of PS-II reaction center complex...	0.09	OrthoFinder output from all 47 species
Ceric.24G024100.1	PSBC, Ceric.24G024100	component *(PsbC/CP43) of PS-II reaction center complex...	0.22	OrthoFinder output from all 47 species
Ceric.29G032200.1	PSBC, Ceric.29G032200	not classified & original description: pacid=50625880...	0.04	OrthoFinder output from all 47 species
Ceric.33G023300.1	PSBC, Ceric.33G023300	component *(PsbC/CP43) of PS-II reaction center complex...	0.1	OrthoFinder output from all 47 species
Ceric.33G053900.1	PSBC, Ceric.33G053900	not classified & original description: pacid=50607717...	0.1	OrthoFinder output from all 47 species
Ceric.36G045000.1	PSBC, Ceric.36G045000	not classified & original description: pacid=50568984...	0.23	OrthoFinder output from all 47 species
Ceric.38G009700.1	PSBC, Ceric.38G009700	component *(PsbC/CP43) of PS-II reaction center complex...	0.24	OrthoFinder output from all 47 species
Ceric.38G040900.1	PSBC, Ceric.38G040900	not classified & original description: pacid=50580441...	0.07	OrthoFinder output from all 47 species
Dac_g04293	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.04	OrthoFinder output from all 47 species
Dcu_g10666	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.12	OrthoFinder output from all 47 species
Dde_g30384	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.02	OrthoFinder output from all 47 species
GSVIVT01006662001	PSBC	Photosystem II CP43 reaction center protein OS=Platanus...	0.11	OrthoFinder output from all 47 species
GSVIVT01027074001	No alias	No description available	0.06	OrthoFinder output from all 47 species
Gb_06826	PSBC	Photosystem II CP43 reaction center protein OS=Cycas...	0.16	OrthoFinder output from all 47 species
Gb_11943	PSBC	Photosystem II CP43 reaction center protein...	0.16	OrthoFinder output from all 47 species
Gb_15570	PSBC	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Gb_19153	PSBC	Photosystem II CP43 reaction center protein...	0.16	OrthoFinder output from all 47 species
Gb_19166	PSBC	Photosystem II CP43 reaction center protein...	0.05	OrthoFinder output from all 47 species
Gb_22672	PSBC	Photosystem II CP43 reaction center protein...	0.16	OrthoFinder output from all 47 species
LOC_Os02g24632.1	PSBC, LOC_Os02g24632	component PsbC/CP43 of PS-II reaction center complex	0.33	OrthoFinder output from all 47 species
LOC_Os04g16874.1	PSBC, LOC_Os04g16874	component PsbC/CP43 of PS-II reaction center complex	0.38	OrthoFinder output from all 47 species
LOC_Os10g21212.1	PSBC, LOC_Os10g21212	component PsbC/CP43 of PS-II reaction center complex	0.28	OrthoFinder output from all 47 species
Len_g16437	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.02	OrthoFinder output from all 47 species
Lfl_g10242	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.17	OrthoFinder output from all 47 species
MA_9155188g0010	PSBC	Photosystem II CP43 reaction center protein OS=Cuscuta...	0.04	OrthoFinder output from all 47 species
Msp_g00655	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.03	OrthoFinder output from all 47 species
Nbi_g01251	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.01	OrthoFinder output from all 47 species
Ore_g02105	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.22	OrthoFinder output from all 47 species
Pnu_g00846	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.04	OrthoFinder output from all 47 species
Ppi_g02376	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002255	PSBC	not classified & original description: CDS=1-627	0.17	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004817	PSBC	not classified & original description: CDS=1-717	0.16	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006637	PSBC	not classified & original description: CDS=1-525	0.17	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006638	PSBC	not classified & original description: CDS=1-420	0.16	OrthoFinder output from all 47 species
Sam_g14692	No alias	component *(PsbC/CP43) of PS-II reaction center complex...	0.06	OrthoFinder output from all 47 species
Smo137689	PSBC	Photosynthesis.photophosphorylation.photosystem II.PS-II...	0.18	OrthoFinder output from all 47 species
Solyc00g230070.1.1	PSBC, Solyc00g230070	Photosystem II CP43 reaction center protein OS=Lepidium...	0.03	OrthoFinder output from all 47 species
Solyc00g500054.1.1	PSBC, Solyc00g500054	component PsbD/D2 of PS-II reaction center complex....	0.33	OrthoFinder output from all 47 species
Solyc00g500136.1.1	PSBC, Solyc00g500136	component PsbD/D2 of PS-II reaction center complex....	0.33	OrthoFinder output from all 47 species
Solyc00g500206.1.1	PSBC, Solyc00g500206	component PsbD/D2 of PS-II reaction center complex....	0.33	OrthoFinder output from all 47 species
Solyc05g041230.1.1	PSBC, Solyc05g041230	Photosystem II CP43 reaction center protein...	0.01	OrthoFinder output from all 47 species
Solyc07g009000.1.1	PSBC, Solyc07g009000	Photosystem II CP43 reaction center protein OS=Coffea...	0.03	OrthoFinder output from all 47 species
Solyc12g027550.2.1	PSBC, Solyc12g027550	Photosystem II CP43 reaction center protein OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Solyc12g038080.1.1	PSBC, Solyc12g038080	Photosystem II CP43 reaction center protein OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Tin_g01229	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.01	OrthoFinder output from all 47 species
Zm00001e042042_P001	PSBC, Zm00001e042042	Photosystem II CP43 reaction center protein OS=Sorghum...	0.1	OrthoFinder output from all 47 species
Zm00001e042157_P001	PSBC, Zm00001e042157	Photosystem II CP43 reaction center protein OS=Sorghum...	0.06	OrthoFinder output from all 47 species
Zm00001e042269_P001	PSBC, Zm00001e042269	Photosystem II CP43 reaction center protein OS=Sorghum...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009533	chloroplast stromal thylakoid	IDA	Interproscan
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009539	photosystem II reaction center	TAS	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
CC	GO:0010287	plastoglobule	IDA	Interproscan
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016168	chlorophyll binding	TAS	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
BP	GO:0019684	photosynthesis, light reaction	TAS	Interproscan
CC	GO:0019867	outer membrane	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000311	plastid large ribosomal subunit	IEP	HCCA
CC	GO:0000312	plastid small ribosomal subunit	IEP	HCCA
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
CC	GO:0000315	organellar large ribosomal subunit	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003959	NADPH dehydrogenase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006175	dATP biosynthetic process	IEP	HCCA
BP	GO:0006176	dATP biosynthetic process from ADP	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006544	glycine metabolic process	IEP	HCCA
BP	GO:0006546	glycine catabolic process	IEP	HCCA
BP	GO:0006636	unsaturated fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006733	obsolete oxidoreduction coenzyme metabolic process	IEP	HCCA
BP	GO:0006743	ubiquinone metabolic process	IEP	HCCA
BP	GO:0006744	ubiquinone biosynthetic process	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0009071	serine family amino acid catabolic process	IEP	HCCA
BP	GO:0009106	lipoate metabolic process	IEP	HCCA
BP	GO:0009108	obsolete coenzyme biosynthetic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009151	purine deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009153	purine deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009200	deoxyribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009202	deoxyribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009215	purine deoxyribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009216	purine deoxyribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009265	2'-deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009544	chloroplast ATP synthase complex	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
BP	GO:0009765	photosynthesis, light harvesting	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009768	photosynthesis, light harvesting in photosystem I	IEP	HCCA
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	HCCA
BP	GO:0009773	photosynthetic electron transport in photosystem I	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
CC	GO:0010319	stromule	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
CC	GO:0031977	thylakoid lumen	IEP	HCCA
BP	GO:0033559	unsaturated fatty acid metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
BP	GO:0046060	dATP metabolic process	IEP	HCCA
BP	GO:0046385	deoxyribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000932	PS_antenna-like	31	469

External Links

No external refs found!

ATCG00280 (PSBC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation