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  5. AT5G66860

AT5G66860


Description : Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain


Gene families : OG0004497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G66860

Target Alias Description ECC score Gene Family Method Actions
Ceric.10G035800.1 Ceric.10G035800 component *(bL25m) of large mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cre02.g081450 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01003545001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01004324001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_39985 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_39986 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g41030.1 LOC_Os01g41030 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os03g41612.1 LOC_Os03g41612 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os05g18750.1 LOC_Os05g18750 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
MA_10435643g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp5g00210.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Sam_g12892 No alias component *(bL25m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc02g090420.2.1 Solyc02g090420 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc11g018560.2.1 Solyc11g018560 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e012441_P002 Zm00001e012441 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e027819_P001 Zm00001e027819 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000741 karyogamy IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005747 mitochondrial respiratory chain complex I IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007000 nucleolus organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009651 response to salt stress IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0017126 nucleologenesis IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR020057 Ribosomal_L25_b-dom 153 238
No external refs found!