AT5G62165 (AGL42)


Aliases : AGL42

Description : AGAMOUS-like 42


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G62165

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00103080 AGL9, SEP3,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.07 OrthoFinder output from all 47 species
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT2G45650 AGL6 AGAMOUS-like 6 0.04 OrthoFinder output from all 47 species
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
Adi_g026151 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0038.g026344 AGL21 not classified & original description: CDS=1-522 0.04 OrthoFinder output from all 47 species
Azfi_s0704.g082655 SHP2, AGL5 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cre11.g467577 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
Dde_g02782 AGL65 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38503 AGL42 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_19178 AGL6 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Gb_41550 No alias transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os03g54170.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os06g06750.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os07g01820.1 AGL7, AP1, LOC_Os07g01820 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
Lfl_g08300 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g40583 AGL6 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_121040g0010 AGL3, SEP4 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_57186g0010 AGL15 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Pir_g64963 AGL6 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55982 AGL8, FUL not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g114840.3.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Solyc04g005320.3.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Spa_g02544 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06302 AGL6 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012024_P001 AGL4, SEP2,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of DNA-templated transcription ISS Interproscan
BP GO:0009838 abscission IMP Interproscan
BP GO:0009909 regulation of flower development IMP Interproscan
BP GO:0010048 vernalization response RCA Interproscan
BP GO:0010150 leaf senescence IMP Interproscan
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light RCA Interproscan
BP GO:0048440 carpel development RCA Interproscan
BP GO:0048481 plant ovule development RCA Interproscan
BP GO:0080187 floral organ senescence IMP Interproscan
Type GO Term Name Evidence Source
BP GO:0042742 defense response to bacterium IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 84 170
IPR002100 TF_MADSbox 10 57
No external refs found!