AT5G61780 (TSN2, Tudor2, AtTudor2)

Aliases : TSN2, Tudor2, AtTudor2

Description : TUDOR-SN protein 2

Gene families : OG0004117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004117_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G61780

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00246090	Tudor1,...	RNA processing.messenger ribonucleoprotein particle...	0.05	OrthoFinder output from all 47 species
Aev_g01570	Tudor1, AtTudor1, TSN1	mRNA endoribonuclease *(TSN) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g08386	Tudor1, AtTudor1, TSN1	mRNA endoribonuclease *(TSN) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0022.g016015	Tudor1, AtTudor1, TSN1	mRNA endoribonuclease *(TSN) & original description: CDS=1-3189	0.03	OrthoFinder output from all 47 species
Cba_g22914	Tudor1, AtTudor1, TSN1	mRNA endoribonuclease *(TSN) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.26G032900.1	Tudor1,...	mRNA endoribonuclease *(TSN) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021357.71	TSN2, Tudor2, AtTudor2	RNA processing.messenger ribonucleoprotein particle...	0.05	OrthoFinder output from all 47 species
Dcu_g10478	Tudor1, AtTudor1, TSN1	mRNA endoribonuclease *(TSN) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g04451	Tudor1, AtTudor1, TSN1	mRNA endoribonuclease *(TSN) & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01005677001	Tudor1, AtTudor1, TSN1	RNA processing.messenger ribonucleoprotein particle...	0.07	OrthoFinder output from all 47 species
Gb_32409	Tudor1, AtTudor1, TSN1	ribonuclease (TSN)	0.03	OrthoFinder output from all 47 species
LOC_Os02g32350.1	Tudor1,...	ribonuclease (TSN)	0.04	OrthoFinder output from all 47 species
Lfl_g16056	Tudor1, AtTudor1, TSN1	mRNA endoribonuclease *(TSN) & original description: none	0.02	OrthoFinder output from all 47 species
Mp2g04260.1	Tudor1, AtTudor1, TSN1	ribonuclease (TSN)	0.03	OrthoFinder output from all 47 species
Nbi_g11404	Tudor1, AtTudor1, TSN1	mRNA endoribonuclease *(TSN) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g20110	TSN2, Tudor2, AtTudor2	mRNA endoribonuclease *(TSN) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g08514	Tudor1, AtTudor1, TSN1	mRNA endoribonuclease *(TSN) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019615	Tudor1, AtTudor1, TSN1	mRNA endoribonuclease *(TSN) & original description: CDS=1-2247	0.03	OrthoFinder output from all 47 species
Smo165776	Tudor1, AtTudor1, TSN1	RNA processing.messenger ribonucleoprotein particle...	0.05	OrthoFinder output from all 47 species
Solyc03g118010.4.1	Tudor1,...	ribonuclease (TSN)	0.03	OrthoFinder output from all 47 species
Solyc03g118020.3.1	Tudor1,...	ribonuclease (TSN)	0.03	OrthoFinder output from all 47 species
Zm00001e022564_P001	Tudor1,...	ribonuclease (TSN)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003723	RNA binding	TAS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005635	nuclear envelope	IDA	Interproscan
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006007	glucose catabolic process	RCA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006098	pentose-phosphate shunt	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006739	NADP metabolic process	None	Extended
BP	GO:0006740	NADPH regeneration	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009306	protein secretion	IGI	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IGI	Interproscan
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009685	gibberellin metabolic process	None	Extended
BP	GO:0009686	gibberellin biosynthetic process	IMP	Interproscan
BP	GO:0009845	seed germination	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016101	diterpenoid metabolic process	None	Extended
BP	GO:0016102	diterpenoid biosynthetic process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019320	hexose catabolic process	None	Extended
BP	GO:0019362	pyridine nucleotide metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032940	secretion by cell	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035592	establishment of protein localization to extracellular region	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046365	monosaccharide catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046496	nicotinamide nucleotide metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0046686	response to cadmium ion	RCA	Interproscan
BP	GO:0046903	secretion	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051156	glucose 6-phosphate metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071692	protein localization to extracellular region	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072524	pyridine-containing compound metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140352	export from cell	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000059	obsolete protein import into nucleus, docking	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0009694	jasmonic acid metabolic process	IEP	HCCA
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	HCCA
BP	GO:0009753	response to jasmonic acid	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0070542	response to fatty acid	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002999	Tudor	730	853
IPR016071	Staphylococal_nuclease_OB-fold	612	711
IPR016071	Staphylococal_nuclease_OB-fold	274	367
IPR016071	Staphylococal_nuclease_OB-fold	42	153
IPR016071	Staphylococal_nuclease_OB-fold	414	549

External Links

No external refs found!

AT5G61780 (TSN2, Tudor2, AtTudor2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation