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  5. AT5G60390

AT5G60390


Description : GTP binding Elongation factor Tu family protein


Gene families : OG0000296 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G60390

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00216110 evm_27.TU.AmTr_v1... Protein biosynthesis.translation elongation.eEF1A... 0.08 OrthoFinder output from all 47 species
AMTR_s00066p00072310 evm_27.TU.AmTr_v1... Protein biosynthesis.translation elongation.eEF1A... 0.12 OrthoFinder output from all 47 species
Adi_g055048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09896 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Ala_g31488 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
Als_g11645 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.11 OrthoFinder output from all 47 species
Als_g26660 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Als_g39127 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Aob_g35866 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Aop_g09508 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Aop_g20702 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.18 OrthoFinder output from all 47 species
Azfi_s0004.g008493 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0291.g063341 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.1 OrthoFinder output from all 47 species
Cba_g03670 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g27290 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Ceric.09G081400.1 Ceric.09G081400 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.17 OrthoFinder output from all 47 species
Ceric.11G084400.1 Ceric.11G084400 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.08 OrthoFinder output from all 47 species
Ceric.1Z125000.1 Ceric.1Z125000 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Ceric.1Z240400.1 Ceric.1Z240400 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Ceric.31G073700.1 Ceric.31G073700 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.14 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021352.57 No alias Protein biosynthesis.translation elongation.eEF1A... 0.12 OrthoFinder output from all 47 species
Cre12.g498600 No alias Elongation factor 1-alpha OS=Glycine max 0.02 OrthoFinder output from all 47 species
Dac_g20808 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Dac_g22627 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.12 OrthoFinder output from all 47 species
Dac_g40329 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.12 OrthoFinder output from all 47 species
Dcu_g09531 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.08 OrthoFinder output from all 47 species
Dde_g04362 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g04717 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g06792 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01025147001 No alias Elongation factor 1-alpha OS=Manihot esculenta 0.02 OrthoFinder output from all 47 species
GSVIVT01025638001 No alias Elongation factor 1-alpha OS=Zea mays 0.04 OrthoFinder output from all 47 species
Gb_17471 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 OrthoFinder output from all 47 species
LOC_Os03g08010.1 LOC_Os03g08010 aminoacyl-tRNA binding factor (eEF1A) 0.21 OrthoFinder output from all 47 species
LOC_Os03g08020.1 LOC_Os03g08020 aminoacyl-tRNA binding factor (eEF1A) 0.2 OrthoFinder output from all 47 species
LOC_Os03g08050.1 LOC_Os03g08050 aminoacyl-tRNA binding factor (eEF1A) 0.2 OrthoFinder output from all 47 species
Len_g28220 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Len_g51156 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Len_g55835 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g07312 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g17369 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g22816 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
MA_434977g0010 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 OrthoFinder output from all 47 species
MA_505653g0010 No alias Elongation factor 1-alpha OS=Triticum aestivum... 0.02 OrthoFinder output from all 47 species
MA_651220g0010 No alias Elongation factor 1-alpha OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Mp3g23400.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.33 OrthoFinder output from all 47 species
Msp_g06564 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Msp_g29578 No alias not classified & original description: none 0.15 OrthoFinder output from all 47 species
Msp_g34336 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06194 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.07 OrthoFinder output from all 47 species
Nbi_g08139 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Ore_g12703 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Ore_g45064 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Pir_g29386 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Pp3c2_6770V3.1 Pp3c2_6770 GTP binding Elongation factor Tu family protein 0.04 OrthoFinder output from all 47 species
Ppi_g05066 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g29939 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g03358 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Sam_g16997 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.1 OrthoFinder output from all 47 species
Sam_g16998 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Sam_g16999 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.12 OrthoFinder output from all 47 species
Sam_g28089 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Sam_g29350 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.17 OrthoFinder output from all 47 species
Sam_g31306 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g37732 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Sam_g39767 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Sam_g39768 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.15 OrthoFinder output from all 47 species
Sam_g49146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo169717 No alias Protein biosynthesis.translation elongation.eEF1A... 0.06 OrthoFinder output from all 47 species
Smo171512 No alias Protein biosynthesis.translation elongation.eEF1A... 0.04 OrthoFinder output from all 47 species
Smo270693 No alias Protein biosynthesis.translation elongation.eEF1A... 0.03 OrthoFinder output from all 47 species
Solyc06g005060.3.1 Solyc06g005060 aminoacyl-tRNA binding factor (eEF1A) 0.22 OrthoFinder output from all 47 species
Solyc06g009970.3.1 Solyc06g009970 aminoacyl-tRNA binding factor (eEF1A) 0.04 OrthoFinder output from all 47 species
Solyc11g150146.1.1 Solyc11g150146 aminoacyl-tRNA binding factor (eEF1A) 0.13 OrthoFinder output from all 47 species
Spa_g08926 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.1 OrthoFinder output from all 47 species
Spa_g18945 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Spa_g24424 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
Spa_g24425 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.12 OrthoFinder output from all 47 species
Spa_g46936 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Spa_g50271 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.07 OrthoFinder output from all 47 species
Spa_g50272 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Spa_g50273 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.1 OrthoFinder output from all 47 species
Tin_g11762 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Tin_g11763 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.07 OrthoFinder output from all 47 species
Zm00001e026762_P001 Zm00001e026762 aminoacyl-tRNA binding factor (eEF1A) 0.16 OrthoFinder output from all 47 species
Zm00001e026763_P003 Zm00001e026763 aminoacyl-tRNA binding factor (eEF1A) 0.21 OrthoFinder output from all 47 species
Zm00001e030598_P002 Zm00001e030598 aminoacyl-tRNA binding factor (eEF1A) 0.06 OrthoFinder output from all 47 species
Zm00001e031390_P004 Zm00001e031390 aminoacyl-tRNA binding factor (eEF1A) 0.19 OrthoFinder output from all 47 species
Zm00001e031391_P002 Zm00001e031391 aminoacyl-tRNA binding factor (eEF1A) 0.14 OrthoFinder output from all 47 species
Zm00001e031407_P001 Zm00001e031407 aminoacyl-tRNA binding factor (eEF1A) 0.13 OrthoFinder output from all 47 species
Zm00001e037355_P001 Zm00001e037355 aminoacyl-tRNA binding factor (eEF1A) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity ISS Interproscan
MF GO:0005516 calmodulin binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP HCCA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006407 rRNA export from nucleus IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009651 response to salt stress IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009735 response to cytokinin IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0010043 response to zinc ion IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042255 ribosome assembly IEP HCCA
BP GO:0042256 cytosolic ribosome assembly IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043628 regulatory ncRNA 3'-end processing IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046686 response to cadmium ion IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051029 rRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 322 429
IPR000795 T_Tr_GTP-bd_dom 7 222
IPR004161 EFTu-like_2 248 313
No external refs found!