1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G59800

AT5G59800 (ATMBD7, MBD7)


Aliases : ATMBD7, MBD7

Description : methyl-CPG-binding domain 7


Gene families : OG0000559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000559_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G59800

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01025031001 ATMBD7, MBD7 Chromatin organisation.DNA methylation.ROS1-mediated DNA... 0.02 OrthoFinder output from all 47 species
Ore_g29243 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008327 methyl-CpG binding IDA Interproscan
MF GO:0008327 methyl-CpG binding ISS Interproscan
CC GO:0010369 chromocenter IDA Interproscan
MF GO:0019899 enzyme binding IPI Interproscan
BP GO:0080167 response to karrikin IEP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005354 galactose transmembrane transporter activity IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015145 monosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015149 hexose transmembrane transporter activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
MF GO:0051119 sugar transmembrane transporter activity IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 176 227
IPR001739 Methyl_CpG_DNA-bd 115 167
No external refs found!