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AT5G59000


Description : RING/FYVE/PHD zinc finger superfamily protein


Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G59000
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Aob_g15074 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0096.g043766 No alias not classified & original description: CDS=488-1357 0.06 OrthoFinder output from all 47 species
Cba_g13386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G007400.1 Ceric.01G007400 not classified & original description: pacid=50590481... 0.03 OrthoFinder output from all 47 species
Ceric.01G007500.1 Ceric.01G007500 not classified & original description: pacid=50591853... 0.03 OrthoFinder output from all 47 species
Ceric.15G009300.1 Ceric.15G009300 E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Cre02.g102600 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g10607 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g06920.2 LOC_Os02g06920 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os04g01490.1 LOC_Os04g01490 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_10436661g0020 No alias RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
Pir_g26175 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g007680.4.1 Solyc09g007680 RING-v-class E3 ligase 0.05 OrthoFinder output from all 47 species
Spa_g55685 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e031805_P001 Zm00001e031805 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e040499_P001 Zm00001e040499 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000302 response to reactive oxygen species IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009644 response to high light intensity IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010321 regulation of vegetative phase change IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010599 lsiRNA processing IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035195 miRNA-mediated gene silencing IEP HCCA
BP GO:0040034 regulation of development, heterochronic IEP HCCA
BP GO:0042542 response to hydrogen peroxide IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 120 163
No external refs found!