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  5. AT5G58680

AT5G58680


Description : ARM repeat superfamily protein


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G58680
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00086p00031680 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G23030 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G60190 No alias ARM repeat superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g017517 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g026489 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04770 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03799 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g16594 PUB14, ATPUB14 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g01685 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19238 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00484 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08532 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19192 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19819 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g60695 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01377.t1 PUB14, ATPUB14,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g04504 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g43903 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G010300.1 ATPUB17, PUB17,... not classified & original description: pacid=50611933... 0.03 OrthoFinder output from all 47 species
Ceric.34G048100.1 Ceric.34G048100 E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000215.127 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g08066 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02800 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06975 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22153 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01036669001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_24091 PUB9, ATPUB9 U-box domain-containing protein 14 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os02g49950.1 LOC_Os02g49950 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os05g39930.1 LOC_Os05g39930 U-box domain-containing protein 16 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g08985 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g20959 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
MA_29517g0010 No alias U-box domain-containing protein 12 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Msp_g00627 PUB15 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g16068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37725 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g14682 ATPUB45, PUB45 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18678 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12544 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11291 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06418 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30958 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g072080.1.1 ATPUB17, PUB17,... U-box domain-containing protein 17 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc05g008230.3.1 Solyc05g008230 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc12g088360.2.1 Solyc12g088360 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g24085 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25117 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e019429_P001 Zm00001e019429 U-box domain-containing protein 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e028839_P001 Zm00001e028839 U-box domain-containing protein 16 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e034012_P001 Zm00001e034012 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009693 ethylene biosynthetic process RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
MF GO:0008265 Mo-molybdopterin cofactor sulfurase activity IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010200 response to chitin IEP HCCA
BP GO:0010243 response to organonitrogen compound IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
MF GO:0010436 carotenoid dioxygenase activity IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016783 sulfurtransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
MF GO:0045549 9-cis-epoxycarotenoid dioxygenase activity IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 134 172
IPR000225 Armadillo 176 214
IPR000225 Armadillo 93 131
No external refs found!