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  5. AT5G56810

AT5G56810


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG0004270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56810
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AT1G19410 No alias FBD / Leucine Rich Repeat domains containing protein 0.02 OrthoFinder output from all 47 species
AT1G50980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT1G55030 No alias RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT3G10750 No alias FBD domain family 0.06 OrthoFinder output from all 47 species
AT3G49020 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.06 OrthoFinder output from all 47 species
AT3G49030 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.08 OrthoFinder output from all 47 species
AT3G49045 No alias No description available 0.04 OrthoFinder output from all 47 species
AT3G49480 No alias Protein with RNI-like/FBD-like domains 0.07 OrthoFinder output from all 47 species
AT3G52680 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT3G52690 No alias RNI-like superfamily protein 0.1 OrthoFinder output from all 47 species
AT4G26350 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 OrthoFinder output from all 47 species
AT5G38570 No alias F-box/RNI-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT5G38590 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.03 OrthoFinder output from all 47 species
AT5G50270 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from all 47 species
AT5G52460 EDA41 FBD, F-box and Leucine Rich Repeat domains containing protein 0.04 OrthoFinder output from all 47 species
AT5G56325 No alias FBD-like domain family protein 0.06 OrthoFinder output from all 47 species
AT5G56390 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 OrthoFinder output from all 47 species
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.07 OrthoFinder output from all 47 species
AT5G56430 No alias F-box/FBD-like domains containing protein 0.07 OrthoFinder output from all 47 species
AT5G56440 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT5G56452 No alias FBD-like domain family protein 0.06 OrthoFinder output from all 47 species
AT5G56560 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.06 OrthoFinder output from all 47 species
AT5G56570 No alias Leucine-rich repeat (LRR) family protein 0.07 OrthoFinder output from all 47 species
AT5G56820 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 OrthoFinder output from all 47 species
AT5G62970 No alias Protein with RNI-like/FBD-like domains 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0010214 seed coat development IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR006566 FBD 357 402
IPR013101 Leu-rich_rpt_2 165 190
IPR001810 F-box_dom 16 54
No external refs found!