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AT5G56440


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG0004270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56440
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AT1G19410 No alias FBD / Leucine Rich Repeat domains containing protein 0.02 OrthoFinder output from all 47 species
AT4G00160 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.03 OrthoFinder output from all 47 species
AT5G56370 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.03 OrthoFinder output from all 47 species
AT5G56430 No alias F-box/FBD-like domains containing protein 0.03 OrthoFinder output from all 47 species
AT5G56810 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000373 Group II intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0004300 enoyl-CoA hydratase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009685 gibberellin metabolic process IEP HCCA
BP GO:0009686 gibberellin biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016102 diterpenoid biosynthetic process IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0097031 obsolete mitochondrial respiratory chain complex I biogenesis IEP HCCA
BP GO:0097034 obsolete mitochondrial respiratory chain complex IV biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 3 41
IPR006566 FBD 352 397
IPR013101 Leu-rich_rpt_2 152 177
No external refs found!