AT5G55100

Description : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein

Gene families : OG0002693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002693_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G55100

Target	Alias	Description	ECC score	Gene Family Method
Cre11.g481700	No alias	No description available	0.03	OrthoFinder output from all 47 species
Lfl_g08834	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp6g19440.1	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Pir_g42634	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g17246	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g17247	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e020062_P001	Zm00001e020062	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e028122_P004	Zm00001e028122	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0043631	RNA polyadenylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000061	Surp	337	386
IPR000061	Surp	152	200
IPR019147	SWAP_N_domain	2	113

External Links

No external refs found!