AT5G55040

Description : DNA-binding bromodomain-containing protein

Gene families : OG0001292 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001292_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G55040

Target	Alias	Description	ECC score	Gene Family Method
Adi_g049436	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g113319	No alias	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Aev_g20554	No alias	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Ala_g07673	No alias	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Ala_g08601	No alias	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ceric.20G005700.1	Ceric.20G005700	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ceric.29G070400.1	Ceric.29G070400	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.08	OrthoFinder output from all 47 species
Cre17.g711100	No alias	No description available	0.03	OrthoFinder output from all 47 species
Ehy_g09954	No alias	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.03	OrthoFinder output from all 47 species
LOC_Os03g03870.1	LOC_Os03g03870	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os09g37760.1	LOC_Os09g37760	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Len_g19175	No alias	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.04	OrthoFinder output from all 47 species
MA_10428440g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp3g15890.1	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Nbi_g08249	No alias	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Nbi_g41800	No alias	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Pir_g15318	No alias	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Pnu_g18817	No alias	SMARCI component *(BRD) of SWI/SNF chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Sam_g26218	No alias	transcriptional repressor *(AITR) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc07g064700.4.1	Solyc07g064700	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Tin_g09973	No alias	SMARCI component *(BRD) of SWI/SNF chromaTin remodeling...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000285	1-phosphatidylinositol-3-phosphate 5-kinase activity	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010118	stomatal movement	IEP	HCCA
BP	GO:0010315	auxin export across the plasma membrane	IEP	HCCA
BP	GO:0010540	basipetal auxin transport	IEP	HCCA
BP	GO:0010541	acropetal auxin transport	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	HCCA
MF	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0090332	stomatal closure	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
BP	GO:0140115	export across plasma membrane	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001487	Bromodomain	193	273

External Links

No external refs found!

AT5G55040

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation