AT5G54470

Description : B-box type zinc finger family protein

Gene families : OG0001765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001765_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G54470
Cluster	HCCA: Cluster_139

Target	Alias	Description	ECC score	Gene Family Method
Adi_g022615	No alias	BBX class-V transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g047135	No alias	BBX class-V transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g13386	No alias	BBX class-V transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene06502.t1	Aspi01Gene06502	BBX class-V transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g03511	No alias	BBX class-V transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Ehy_g29917	No alias	BBX class-V transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g31532	No alias	BBX class-V transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01000440001	No alias	No description available	0.05	OrthoFinder output from all 47 species
GSVIVT01014471001	No alias	No description available	0.04	OrthoFinder output from all 47 species
LOC_Os02g07930.1	LOC_Os02g07930	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os03g22770.1	LOC_Os03g22770	transcription factor (BBX-CO)	0.02	OrthoFinder output from all 47 species
LOC_Os08g08120.1	LOC_Os08g08120	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Msp_g09192	No alias	BBX class-V transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g09193	No alias	BBX class-V transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g09711	No alias	BBX class-V transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g39680	No alias	BBX class-V transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g45447	No alias	BBX class-V transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g58606	No alias	BBX class-V transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g33590	STH2	BBX class-V transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0094.g019161	No alias	BBX class-V transcription factor & original description:...	0.01	OrthoFinder output from all 47 species
Solyc07g053140.3.1	Solyc07g053140	transcription factor (BBX-CO)	0.18	OrthoFinder output from all 47 species
Tin_g04352	No alias	BBX class-V transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g12860	No alias	BBX class-V transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e013778_P001	Zm00001e013778	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Zm00001e030406_P001	BBX32, Zm00001e030406	no hits & (original description: none)	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
BP	GO:0005982	starch metabolic process	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
BP	GO:0009414	response to water deprivation	IEP	HCCA
BP	GO:0009415	response to water	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0042538	hyperosmotic salinity response	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G54470

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation