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  5. AT5G53640

AT5G53640


Description : CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G53635.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).


Gene families : OG0007014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G53640

Target Alias Description ECC score Gene Family Method Actions
AT1G16940 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT1G32020 No alias F-box family protein 0.02 OrthoFinder output from all 47 species
AT1G66640 No alias RNI-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G78750 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G25850 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT5G44940 No alias F-box/RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G44950 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT5G53635 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT5G53840 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0005484 SNAP receptor activity IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
InterPro domains Description Start Stop
IPR006566 FBD 437 481
IPR013101 Leu-rich_rpt_2 223 248
IPR013101 Leu-rich_rpt_2 166 191
IPR001810 F-box_dom 30 58
No external refs found!