AT5G53550 (ATYSL3, YSL3)

Aliases : ATYSL3, YSL3

Description : YELLOW STRIPE like 3

Gene families : OG0000334 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000334_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G53550

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00229010	YSL6,...	Solute transport.carrier-mediated transport.OPT...	0.02	OrthoFinder output from all 47 species
AMTR_s00027p00045420	ATYSL3, YSL3,...	Solute transport.carrier-mediated transport.OPT...	0.05	OrthoFinder output from all 47 species
AMTR_s00029p00090040	YSL7,...	Solute transport.carrier-mediated transport.OPT...	0.03	OrthoFinder output from all 47 species
AMTR_s00029p00090440	evm_27.TU.AmTr_v1...	Solute transport.carrier-mediated transport.OPT...	0.03	OrthoFinder output from all 47 species
AMTR_s00103p00133280	ATYSL3, YSL3,...	Solute transport.carrier-mediated transport.OPT...	0.04	OrthoFinder output from all 47 species
AMTR_s00103p00133560	ATYSL3, YSL3,...	Solute transport.carrier-mediated transport.OPT...	0.06	OrthoFinder output from all 47 species
AMTR_s00154p00064550	YSL7,...	Probable metal-nicotianamine transporter YSL12 OS=Oryza...	0.03	OrthoFinder output from all 47 species
AMTR_s00154p00064710	YSL4,...	Solute transport.carrier-mediated transport.OPT...	0.03	OrthoFinder output from all 47 species
AMTR_s00154p00065510	YSL6,...	Solute transport.carrier-mediated transport.OPT...	0.05	OrthoFinder output from all 47 species
AT3G17650	YSL5, PDE321	YELLOW STRIPE like 5	0.06	OrthoFinder output from all 47 species
AT3G27020	YSL6	YELLOW STRIPE like 6	0.04	OrthoFinder output from all 47 species
Ala_g02368	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Ala_g20569	YSL6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g38157	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Als_g20697	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Als_g22814	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.04	OrthoFinder output from all 47 species
Als_g29345	YSL5, PDE321	ferric cation-chelator transporter *(YSL) & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene03882.t1	YSL6, Aspi01Gene03882	ferric cation-chelator transporter *(YSL) & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene03904.t1	YSL6, Aspi01Gene03904	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene52239.t1	YSL7, Aspi01Gene52239	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene52240.t1	YSL7, Aspi01Gene52240	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene52304.t2	YSL7, Aspi01Gene52304	ferric cation-chelator transporter *(YSL) & original...	0.02	OrthoFinder output from all 47 species
Cba_g22676	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Ceric.13G092300.1	YSL6, Ceric.13G092300	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Dac_g22908	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.04	OrthoFinder output from all 47 species
Dde_g07401	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01019645001	ATYSL1, YSL1	Nutrient uptake.iron uptake.chelation-based strategy...	0.11	OrthoFinder output from all 47 species
GSVIVT01019646001	ATYSL1, YSL1	Nutrient uptake.iron uptake.chelation-based strategy...	0.04	OrthoFinder output from all 47 species
Gb_23122	YSL6	iron chelator transporter (YSL). ferric cation-chelator...	0.03	OrthoFinder output from all 47 species
Gb_27981	ATYSL3, YSL3	iron chelator transporter (YSL). ferric cation-chelator...	0.03	OrthoFinder output from all 47 species
Gb_39396	ATYSL3, YSL3	iron chelator transporter (YSL)	0.03	OrthoFinder output from all 47 species
Gb_40334	YSL7	iron chelator transporter (YSL). ferric cation-chelator...	0.03	OrthoFinder output from all 47 species
Gb_41263	YSL7	iron chelator transporter (YSL). ferric cation-chelator...	0.05	OrthoFinder output from all 47 species
LOC_Os01g13710.1	YSL7, LOC_Os01g13710	iron chelator transporter (YSL). ferric cation-chelator...	0.03	OrthoFinder output from all 47 species
LOC_Os04g44300.1	YSL7, LOC_Os04g44300	iron chelator transporter (YSL). ferric cation-chelator...	0.08	OrthoFinder output from all 47 species
LOC_Os04g44320.1	YSL7, LOC_Os04g44320	iron chelator transporter (YSL). ferric cation-chelator...	0.06	OrthoFinder output from all 47 species
LOC_Os05g16290.1	YSL7, LOC_Os05g16290	iron chelator transporter (YSL). ferric cation-chelator...	0.04	OrthoFinder output from all 47 species
Len_g41418	YSL6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10431747g0010	YSL7	Probable metal-nicotianamine transporter YSL12 OS=Oryza...	0.02	OrthoFinder output from all 47 species
MA_508161g0010	YSL7	iron chelator transporter (YSL). ferric cation-chelator...	0.04	OrthoFinder output from all 47 species
Msp_g13893	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Msp_g26187	YSL6	iron chelator transporter *(YSL) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g08018	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g17238	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.02	OrthoFinder output from all 47 species
Nbi_g42346	YSL6	iron chelator transporter *(YSL) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g07859	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Pir_g52006	YSL6	iron chelator transporter *(YSL) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g52007	YSL6	iron chelator transporter *(YSL) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g52008	YSL7	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Pnu_g10590	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.04	OrthoFinder output from all 47 species
Pnu_g11994	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g013989	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.02	OrthoFinder output from all 47 species
Sam_g16874	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g22236	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g031920.3.1	YSL7, Solyc03g031920	iron chelator transporter (YSL). ferric cation-chelator...	0.09	OrthoFinder output from all 47 species
Solyc08g083060.3.1	ATYSL1, YSL1,...	iron chelator transporter (YSL). ferric cation-chelator...	0.08	OrthoFinder output from all 47 species
Spa_g21975	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Spa_g26130	YSL6	ferric cation-chelator transporter *(YSL) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e007544_P001	YSL7, Zm00001e007544	iron chelator transporter (YSL). ferric cation-chelator...	0.03	OrthoFinder output from all 47 species
Zm00001e008356_P001	YSL6, Zm00001e008356	iron chelator transporter (YSL). ferric cation-chelator...	0.04	OrthoFinder output from all 47 species
Zm00001e025365_P001	YSL7, Zm00001e025365	iron chelator transporter (YSL). ferric cation-chelator...	0.04	OrthoFinder output from all 47 species
Zm00001e026899_P002	YSL7, Zm00001e026899	iron chelator transporter (YSL). ferric cation-chelator...	0.04	OrthoFinder output from all 47 species
Zm00001e026901_P002	YSL7, Zm00001e026901	iron chelator transporter (YSL). ferric cation-chelator...	0.04	OrthoFinder output from all 47 species
Zm00001e028817_P001	YSL7, Zm00001e028817	iron chelator transporter (YSL). ferric cation-chelator...	0.04	OrthoFinder output from all 47 species
Zm00001e041266_P002	YSL7, Zm00001e041266	iron chelator transporter (YSL). ferric cation-chelator...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	IGI	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006857	oligopeptide transport	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009624	response to nematode	IEP	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
MF	GO:0015603	iron chelate transmembrane transporter activity	None	Extended
BP	GO:0015833	peptide transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0048316	seed development	IGI	Interproscan
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051707	response to other organism	None	Extended
MF	GO:0051980	iron-nicotianamine transmembrane transporter activity	IGI	Interproscan
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002237	response to molecule of bacterial origin	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005217	intracellular ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005262	calcium channel activity	IEP	HCCA
MF	GO:0005267	potassium channel activity	IEP	HCCA
MF	GO:0005272	sodium channel activity	IEP	HCCA
BP	GO:0006568	tryptophan metabolic process	IEP	HCCA
BP	GO:0006569	tryptophan catabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006586	indolalkylamine metabolic process	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
BP	GO:0006874	cellular calcium ion homeostasis	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0009063	amino acid catabolic process	IEP	HCCA
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009683	indoleacetic acid metabolic process	IEP	HCCA
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0009851	auxin biosynthetic process	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
BP	GO:0033037	polysaccharide localization	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042436	indole-containing compound catabolic process	IEP	HCCA
BP	GO:0042446	hormone biosynthetic process	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0052386	cell wall thickening	IEP	HCCA
BP	GO:0052543	callose deposition in cell wall	IEP	HCCA
BP	GO:0052545	callose localization	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055074	calcium ion homeostasis	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004813	OPT	41	655

External Links

No external refs found!

AT5G53550 (ATYSL3, YSL3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation