AT5G53370 (ATPMEPCRF, PMEPCRF)

Aliases : ATPMEPCRF, PMEPCRF

Description : pectin methylesterase PCR fragment F

Gene families : OG0000147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000147_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G53370

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00230630	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
AMTR_s00003p00239700	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
AMTR_s00040p00188020	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
AMTR_s00129p00028250	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
AT2G26450	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	OrthoFinder output from all 47 species
AT2G45220	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	OrthoFinder output from all 47 species
AT2G47550	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	OrthoFinder output from all 47 species
AT3G10710	RHS12	root hair specific 12	0.06	OrthoFinder output from all 47 species
AT3G43270	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	OrthoFinder output from all 47 species
AT4G02320	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	OrthoFinder output from all 47 species
AT5G04960	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.05	OrthoFinder output from all 47 species
AT5G51500	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	OrthoFinder output from all 47 species
AT5G64640	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	OrthoFinder output from all 47 species
Aev_g08266	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Aev_g12203	PME1, ATPME1	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ala_g11030	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Als_g05028	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Als_g10486	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Als_g46714	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Aop_g11322	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Aop_g61344	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene05823.t1	Aspi01Gene05823	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene10954.t1	ATPMEPCRF,...	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene45157.t1	ATPME2, PME2,...	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.01G014700.1	Ceric.01G014700	EC_3.1 hydrolase acting on ester bond & original...	0.06	OrthoFinder output from all 47 species
Ceric.01G014900.1	Ceric.01G014900	EC_3.1 hydrolase acting on ester bond & original...	0.06	OrthoFinder output from all 47 species
Ceric.19G055900.1	Ceric.19G055900	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.19G056000.1	ATPMEPCRF,...	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Ceric.1Z117500.1	ATPME2, PME2,...	EC_3.1 hydrolase acting on ester bond & original...	0.05	OrthoFinder output from all 47 species
Ceric.30G016400.1	ATPMEPCRF,...	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Dac_g15947	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Dac_g44370	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Dcu_g01562	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Dcu_g11844	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Dcu_g12104	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Dde_g48560	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.08	OrthoFinder output from all 47 species
Ehy_g04854	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ehy_g08496	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ehy_g09868	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ehy_g10683	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01012639001	ATPMEPCRA, PMEPCRA	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
GSVIVT01016667001	PME1, ATPME1	Cell wall.pectin.homogalacturonan.modification and...	0.06	OrthoFinder output from all 47 species
GSVIVT01017687001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
GSVIVT01026518001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.05	OrthoFinder output from all 47 species
GSVIVT01027653001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
GSVIVT01028040001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.05	OrthoFinder output from all 47 species
GSVIVT01028265001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
GSVIVT01031165001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
GSVIVT01031667001	PME61	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
GSVIVT01037349001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
GSVIVT01038546001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
Gb_10522	ATPME3, PME3	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Gb_10523	ATPME3, PME3	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Gb_18512	ATPME3, PME3	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Gb_24564	ATPME3, PME3	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Gb_25439	ATPMEPCRF, PMEPCRF	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Gb_28159	ATPMEPCRF, PMEPCRF	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Gb_35881	ATPMEPCRF, PMEPCRF	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Gb_36012	No alias	pectin methylesterase	0.04	OrthoFinder output from all 47 species
LOC_Os01g15039.1	LOC_Os01g15039	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os01g65790.1	LOC_Os01g65790	pectin methylesterase	0.04	OrthoFinder output from all 47 species
LOC_Os02g54190.1	PME61, LOC_Os02g54190	pectin methylesterase	0.02	OrthoFinder output from all 47 species
LOC_Os05g29790.1	ATPMEPCRB, LOC_Os05g29790	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os06g09340.1	LOC_Os06g09340	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os07g47830.1	ATPME3, PME3,...	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os08g34900.1	LOC_Os08g34900	pectin methylesterase	0.04	OrthoFinder output from all 47 species
LOC_Os11g07090.1	LOC_Os11g07090	pectin methylesterase	0.05	OrthoFinder output from all 47 species
LOC_Os11g08750.1	LOC_Os11g08750	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Len_g45359	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
MA_10435891g0010	PME61	pectin methylesterase	0.05	OrthoFinder output from all 47 species
MA_10436266g0010	No alias	Pectinesterase 3 OS=Citrus sinensis...	0.05	OrthoFinder output from all 47 species
MA_130858g0010	ATPMEPCRF, PMEPCRF	pectin methylesterase	0.02	OrthoFinder output from all 47 species
MA_18093g0010	ATPMEPCRA, PMEPCRA	Pectinesterase 2.1 OS=Solanum lycopersicum...	0.05	OrthoFinder output from all 47 species
MA_648837g0010	ATPMEPCRF, PMEPCRF	pectin methylesterase	0.03	OrthoFinder output from all 47 species
MA_931259g0010	No alias	pectin methylesterase	0.06	OrthoFinder output from all 47 species
Mp6g15150.1	No alias	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Mp8g00060.1	ATPME2, PME2	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Mp8g09330.1	RHS12	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Msp_g01650	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Msp_g25874	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ore_g36059	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ppi_g07525	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ppi_g12664	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000947	No alias	not classified & original description: CDS=1-831	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013432	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0165.g024099	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Solyc01g091050.4.1	Solyc01g091050	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Solyc01g099950.1.1	Solyc01g099950	pectin methylesterase	0.06	OrthoFinder output from all 47 species
Solyc02g014300.2.1	Solyc02g014300	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Solyc02g080220.3.1	ATPMEPCRA,...	pectin methylesterase	0.05	OrthoFinder output from all 47 species
Solyc02g081990.3.1	Solyc02g081990	pectin methylesterase	0.05	OrthoFinder output from all 47 species
Solyc03g078100.3.1	Solyc03g078100	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Solyc03g083360.3.1	ATPMEPCRF,...	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Solyc03g083870.4.1	Solyc03g083870	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Solyc03g123620.4.1	PME1, ATPME1,...	pectin methylesterase	0.05	OrthoFinder output from all 47 species
Solyc07g017600.3.1	PME44, ATPME44,...	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Solyc07g064190.3.1	ATPMEPCRA,...	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Zm00001e009863_P001	Zm00001e009863	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Zm00001e011069_P001	PME61, Zm00001e011069	pectin methylesterase	0.06	OrthoFinder output from all 47 species
Zm00001e017514_P001	ATPMEPCRB, Zm00001e017514	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Zm00001e017515_P001	ATPME2, PME2,...	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Zm00001e026790_P001	ATPMEPCRB, Zm00001e026790	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Zm00001e035838_P001	Zm00001e035838	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Zm00001e041006_P001	Zm00001e041006	pectin methylesterase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006833	water transport	RCA	Interproscan
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009746	response to hexose	None	Extended
BP	GO:0009750	response to fructose	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030599	pectinesterase activity	ISS	Interproscan
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034284	response to monosaccharide	None	Extended
BP	GO:0042044	fluid transport	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006534	cysteine metabolic process	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009069	serine family amino acid metabolic process	IEP	HCCA
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0019344	cysteine biosynthetic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
MF	GO:0080030	methyl indole-3-acetate esterase activity	IEP	HCCA
MF	GO:0080032	methyl jasmonate esterase activity	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	273	570
IPR006501	Pectinesterase_inhib_dom	74	223

External Links

No external refs found!

AT5G53370 (ATPMEPCRF, PMEPCRF)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation