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  5. AT5G51000

AT5G51000


Description : F-box and associated interaction domains-containing protein


Gene families : OG0001907 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001907_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G51000
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
AT1G11620 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT1G59680 EDA1 F-box associated ubiquitination effector family protein 0.14 OrthoFinder output from all 47 species
AT1G62270 No alias F-box and associated interaction domains-containing protein 0.06 OrthoFinder output from all 47 species
AT2G33655 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from all 47 species
AT2G38590 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT3G16820 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT3G17500 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT3G19560 No alias F-box family protein 0.05 OrthoFinder output from all 47 species
AT3G19880 No alias F-box and associated interaction domains-containing protein 0.08 OrthoFinder output from all 47 species
AT3G20710 No alias F-box family protein 0.05 OrthoFinder output from all 47 species
AT3G21120 No alias F-box and associated interaction domains-containing protein 0.06 OrthoFinder output from all 47 species
AT3G22350 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT3G22870 No alias F-box and associated interaction domains-containing protein 0.08 OrthoFinder output from all 47 species
AT3G25090 No alias F-box associated ubiquitination effector family protein 0.04 OrthoFinder output from all 47 species
AT5G36730 No alias F-box and associated interaction domains-containing protein 0.05 OrthoFinder output from all 47 species
AT5G36820 No alias F-box and associated interaction domains-containing protein 0.05 OrthoFinder output from all 47 species
AT5G41500 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species
AT5G41510 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
CC GO:0000214 tRNA-intron endonuclease complex IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 3 46
IPR006527 F-box-assoc_dom_typ1 203 356
No external refs found!