AT5G49420

Description : MADS-box transcription factor family protein

Gene families : OG0017014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0017014_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G49420
Cluster	HCCA: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT1G46408	AGL97	AGAMOUS-like 97	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	16	56

External Links

No external refs found!