AT5G48600 (ATCAP-C, ATSMC4, SMC3, ATSMC3)

Aliases : ATCAP-C, ATSMC4, SMC3, ATSMC3

Description : structural maintenance of chromosome 3

Gene families : OG0004748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004748_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G48600

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00079920	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.03	OrthoFinder output from all 47 species
Ala_g23510	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.02	OrthoFinder output from all 47 species
Als_g16126	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Aop_g09601	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.02	OrthoFinder output from all 47 species
Azfi_s0093.g043172	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Ceric.07G037500.1	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000711.41	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.03	OrthoFinder output from all 47 species
Cre12.g493400	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.01	OrthoFinder output from all 47 species
Dcu_g14679	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.02	OrthoFinder output from all 47 species
GSVIVT01011408001	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.04	OrthoFinder output from all 47 species
LOC_Os05g41750.1	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.02	OrthoFinder output from all 47 species
Len_g03914	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.02	OrthoFinder output from all 47 species
Lfl_g38059	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
MA_317249g0010	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.03	OrthoFinder output from all 47 species
Mp5g06430.1	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.04	OrthoFinder output from all 47 species
Msp_g32088	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015991	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Solyc02g087980.3.1	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	RCA	Interproscan
BP	GO:0006270	DNA replication initiation	RCA	Interproscan
BP	GO:0006275	regulation of DNA replication	RCA	Interproscan
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	RCA	Interproscan
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	ISS	Interproscan
BP	GO:0007129	homologous chromosome pairing at meiosis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0008283	cell population proliferation	RCA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010267	ta-siRNA processing	RCA	Interproscan
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010564	regulation of cell cycle process	RCA	Interproscan
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016458	obsolete gene silencing	RCA	Interproscan
BP	GO:0016570	histone modification	RCA	Interproscan
BP	GO:0016571	histone methylation	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030422	siRNA processing	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	RCA	Interproscan
BP	GO:0031048	RNA-mediated heterochromatin formation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0034968	histone lysine methylation	RCA	Interproscan
BP	GO:0035196	miRNA processing	RCA	Interproscan
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048449	floral organ formation	RCA	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0051607	defense response to virus	RCA	Interproscan
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051726	regulation of cell cycle	RCA	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0070918	regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
BP	GO:0140718	facultative heterochromatin formation	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901990	regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1902749	regulation of cell cycle G2/M phase transition	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1905393	plant organ formation	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000280	nuclear division	IEP	HCCA
BP	GO:0000281	mitotic cytokinesis	IEP	HCCA
CC	GO:0000775	chromosome, centromeric region	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
BP	GO:0006261	DNA-templated DNA replication	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
MF	GO:0009008	DNA-methyltransferase activity	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0009896	positive regulation of catabolic process	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009954	proximal/distal pattern formation	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010069	zygote asymmetric cytokinesis in embryo sac	IEP	HCCA
BP	GO:0010070	zygote asymmetric cell division	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
BP	GO:0010425	DNA methylation on cytosine within a CNG sequence	IEP	HCCA
BP	GO:0010589	leaf proximal/distal pattern formation	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
BP	GO:0016569	obsolete covalent chromatin modification	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
BP	GO:0031329	regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031400	negative regulation of protein modification process	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0032776	DNA methylation on cytosine	IEP	HCCA
BP	GO:0033233	regulation of protein sumoylation	IEP	HCCA
BP	GO:0033234	negative regulation of protein sumoylation	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034249	negative regulation of amide metabolic process	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035195	miRNA-mediated gene silencing	IEP	HCCA
BP	GO:0035279	miRNA-mediated gene silencing by mRNA destabilization	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
BP	GO:0043487	regulation of RNA stability	IEP	HCCA
BP	GO:0043488	regulation of mRNA stability	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0050779	RNA destabilization	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
BP	GO:0061013	regulation of mRNA catabolic process	IEP	HCCA
BP	GO:0061014	positive regulation of mRNA catabolic process	IEP	HCCA
BP	GO:0061157	mRNA destabilization	IEP	HCCA
BP	GO:0061640	cytoskeleton-dependent cytokinesis	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
BP	GO:1903311	regulation of mRNA metabolic process	IEP	HCCA
BP	GO:1903313	positive regulation of mRNA metabolic process	IEP	HCCA
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:1903321	negative regulation of protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010935	SMC_hinge	555	671
IPR003395	RecF/RecN/SMC_N	25	1224

External Links

No external refs found!

AT5G48600 (ATCAP-C, ATSMC4, SMC3, ATSMC3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation