AT5G48150 (PAT1)

Aliases : PAT1

Description : GRAS family transcription factor

Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G48150

Target	Alias	Description	ECC score	Gene Family Method
Adi_g085312	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g05274	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01362	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g06178	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0011.g012766	PAT1	GRAS-type transcription factor & original description: CDS=1-1848	0.03	OrthoFinder output from all 47 species
Dac_g00898	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g22968	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g16560	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os07g39470.1	PAT1, LOC_Os07g39470	transcription factor (GRAS)	0.03	OrthoFinder output from all 47 species
Len_g20939	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g15172	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g16566	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007649	SCL5	GRAS-type transcription factor & original description: CDS=1-2229	0.03	OrthoFinder output from all 47 species
Solyc05g054170.4.1	SCL13, Solyc05g054170	transcription factor (GRAS)	0.03	OrthoFinder output from all 47 species
Spa_g23112	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e031707_P001	SCL1, Zm00001e031707	transcription factor (GRAS)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0004871	obsolete signal transducer activity	IMP	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	IMP	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005202	TF_GRAS	120	490

External Links

No external refs found!

AT5G48150 (PAT1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation