AT5G47960 (ATRABA4C, RABA4C, SMG1)

Aliases : ATRABA4C, RABA4C, SMG1

Description : RAB GTPase homolog A4C

Gene families : OG0001718 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001718_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G47960
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AT3G12160	RABA4D, ATRABA4D	RAB GTPase homolog A4D	0.03	OrthoFinder output from all 47 species
Azfi_s0032.g024972	ATRABA4C, RABA4C, SMG1	A-class RAB GTPase & original description: CDS=174-839	0.02	OrthoFinder output from all 47 species
LOC_Os09g10940.1	ATRABA4C,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Sam_g17974	No alias	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g05833	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e012878_P002	AtRABA4a,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0010583	response to cyclopentenone	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	17	177

External Links

No external refs found!