AT5G46760

Description : Basic helix-loop-helix (bHLH) DNA-binding family protein

Gene families : OG0000245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000245_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G46760

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00225810	ATMYC2, MYC2,...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
AMTR_s00025p00048410	BHLH42, TT8,...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
Adi_g018534	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g023814	ATMYC2, MYC2,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g13949	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g05717	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g29175	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g30820	ATMYC2, MYC2,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene45443.t1	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g20851	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.33G048200.1	Ceric.33G048200	bHLH-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dde_g31249	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07082	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Gb_04728	ATMYC2, MYC2,...	no description available(sp\|a0a3q7hrz6\|myc2_sollc : 189.0)	0.05	OrthoFinder output from all 47 species
Gb_17737	ATMYC2, MYC2,...	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os07g11020.1	BHLH42, TT8,...	Basic helix-loop-helix protein A OS=Pisum sativum...	0.03	OrthoFinder output from all 47 species
LOC_Os10g42430.1	ATMYC2, MYC2,...	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
MA_1670089g0010	ATMYC2, MYC2,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_4076g0010	No alias	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
MpVg00340.1	ATMYC2, MYC2,...	No annotation	0.05	OrthoFinder output from all 47 species
Msp_g14442	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g17486	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g24060	No alias	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g42228	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g54759	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g02577	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g13834	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Smo445428	No alias	No description available	0.03	OrthoFinder output from all 47 species
Smo73360	BHLH42, TT8	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
Solyc06g083980.3.1	Solyc06g083980	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
Solyc08g076930.1.1	ATMYC2, MYC2,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Spa_g52382	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g55797	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g03440	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e002421_P001	ATMYC2, MYC2,...	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IMP	Interproscan
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IMP	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009753	response to jasmonic acid	IMP	Interproscan
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009813	flavonoid biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043425	bHLH transcription factor binding	IPI	Interproscan
BP	GO:0045893	positive regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046283	anthocyanin-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0043069	negative regulation of programmed cell death	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0060548	negative regulation of cell death	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025610	MYC/MYB_N	52	235
IPR011598	bHLH_dom	415	460

External Links

No external refs found!

AT5G46760

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation