Aliases : AT PRP39-2, PRP39-2
Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00179p00033790 | AT PRP39-2,... | No description available | 0.03 | OrthoFinder output from all 47 species | |
Aob_g16599 | PRP39 | pre-mRNA-processing protein *(PRP39) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0064.g035594 | PRP39 | pre-mRNA-processing protein *(PRP39) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.04G096600.1 | PRP39, Ceric.04G096600 | pre-mRNA-processing protein *(PRP39) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g10295 | PRP39 | pre-mRNA-processing protein *(PRP39) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g11835 | No alias | pre-mRNA-processing protein *(PRP39) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Solyc02g071240.3.1 | AT PRP39-2,... | pre-mRNA-processing protein (PRP39) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005634 | nucleus | ISM | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | HCCA |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
BP | GO:0003006 | developmental process involved in reproduction | IEP | HCCA |
MF | GO:0003724 | RNA helicase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
CC | GO:0005635 | nuclear envelope | IEP | HCCA |
CC | GO:0005829 | cytosol | IEP | HCCA |
BP | GO:0006007 | glucose catabolic process | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006312 | mitotic recombination | IEP | HCCA |
BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
BP | GO:0006486 | protein glycosylation | IEP | HCCA |
BP | GO:0006487 | protein N-linked glycosylation | IEP | HCCA |
BP | GO:0007584 | response to nutrient | IEP | HCCA |
MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | HCCA |
BP | GO:0009056 | catabolic process | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0009560 | embryo sac egg cell differentiation | IEP | HCCA |
BP | GO:0009593 | detection of chemical stimulus | IEP | HCCA |
BP | GO:0009594 | detection of nutrient | IEP | HCCA |
BP | GO:0009791 | post-embryonic development | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010050 | vegetative phase change | IEP | HCCA |
BP | GO:0010072 | primary shoot apical meristem specification | IEP | HCCA |
BP | GO:0010260 | obsolete animal organ senescence | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0019320 | hexose catabolic process | IEP | HCCA |
BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
BP | GO:0022412 | cellular process involved in reproduction in multicellular organism | IEP | HCCA |
BP | GO:0022414 | reproductive process | IEP | HCCA |
BP | GO:0030154 | cell differentiation | IEP | HCCA |
CC | GO:0031967 | organelle envelope | IEP | HCCA |
CC | GO:0031975 | envelope | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
BP | GO:0040034 | regulation of development, heterochronic | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043413 | macromolecule glycosylation | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
BP | GO:0046365 | monosaccharide catabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
BP | GO:0048316 | seed development | IEP | HCCA |
BP | GO:0048506 | regulation of timing of meristematic phase transition | IEP | HCCA |
BP | GO:0048509 | regulation of meristem development | IEP | HCCA |
BP | GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0048869 | cellular developmental process | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
BP | GO:0070085 | glycosylation | IEP | HCCA |
BP | GO:0080022 | primary root development | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0090421 | embryonic meristem initiation | IEP | HCCA |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |