AT5G45150 (RTL3)

Aliases : RTL3

Description : RNAse THREE-like protein 3

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G45150

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00252500	ATRTL2, RTL2,...	Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00033p00127000	ATDCL3, DCL3,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.03	OrthoFinder output from all 47 species
AT3G20420	ATRTL2, RTL2	RNAse THREE-like protein 2	0.03	OrthoFinder output from all 47 species
AT4G15417	ATRTL1, RTL1	RNAse II-like 1	0.04	OrthoFinder output from all 47 species
Cba_g62226	DCL1, CAF,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000741.29	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
LOC_Os03g38740.1	ATDCL2, DCL2,...	Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Smo448444	DCL1, CAF,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.03	OrthoFinder output from all 47 species
Smo84784	DCL1, CAF,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.03	OrthoFinder output from all 47 species
Solyc08g067210.3.1	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.05	OrthoFinder output from all 47 species
Solyc10g004000.1.1	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003725	double-stranded RNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	ISS	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR014720	dsRBD_dom	585	643
IPR000999	RNase_III_dom	33	140
IPR000999	RNase_III_dom	447	549

External Links

No external refs found!