AT5G45100


Description : SBP (S-ribonuclease binding protein) family protein


Gene families : OG0000315 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000315_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G45100

Target Alias Description ECC score Gene Family Method Actions
Adi_g039739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g28857 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12144 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044160 No alias not classified & original description: CDS=454-1641 0.06 OrthoFinder output from all 47 species
GSVIVT01020407001 No alias Probable BOI-related E3 ubiquitin-protein ligase 3... 0.05 OrthoFinder output from all 47 species
LOC_Os04g33030.1 LOC_Os04g33030 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os11g34080.1 LOC_Os11g34080 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_114475g0010 SBP1 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g00907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g05830 SBP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019218 No alias not classified & original description: CDS=378-1583 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023588 SBP1 not classified & original description: CDS=3746-4861 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0043067 regulation of programmed cell death IMP Interproscan
Type GO Term Name Evidence Source
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006865 amino acid transport IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019632 shikimate metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!