AT5G44340 (TUB4)

Aliases : TUB4

Description : tubulin beta chain 4

Gene families : OG0000152 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000152_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G44340

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00251790	TUB8,...	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
AMTR_s00032p00056500	TUB8,...	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.05	OrthoFinder output from all 47 species
Adi_g008453	TUB8	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g016052	TUB8	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Adi_g028533	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Adi_g040881	TUB7	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g068860	TUB7	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g075879	TUB2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g085232	TUB7	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g085233	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Adi_g094247	TUB8	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g100099	TUB1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g105533	TUB8	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Adi_g107584	TUB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g07139	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Als_g10859	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000407	TUB1	not classified & original description: CDS=21-950	0.06	OrthoFinder output from all 47 species
Cba_g15539	TUB2	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Ceric.04G002000.1	TUB2, Ceric.04G002000	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Ceric.04G088300.1	TUB8, Ceric.04G088300	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Ceric.07G056800.1	TUB6, Ceric.07G056800	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Ceric.16G070200.1	TUB2, Ceric.16G070200	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Ceric.30G059900.1	TUB6, Ceric.30G059900	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001067.14	TUB2	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001067.6	TUB2	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.01	OrthoFinder output from all 47 species
Cre12.g542250	TUB6	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.01	OrthoFinder output from all 47 species
Cre12.g549550	TUB6	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Dac_g42639	TUB8	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Dcu_g07509	TUB8	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Dcu_g07559	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Dcu_g13447	TUB2	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Dcu_g26815	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Dcu_g31278	TUB2	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Dde_g05253	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Dde_g31303	TUB8	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Dde_g42464	TUB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01019758001	TUB6	Tubulin beta-4 chain OS=Eleusine indica	0.07	OrthoFinder output from all 47 species
GSVIVT01021707001	TUB9	Tubulin beta chain (Fragment) OS=Glycine max	0.1	OrthoFinder output from all 47 species
GSVIVT01025777001	No alias	No description available	0.04	OrthoFinder output from all 47 species
GSVIVT01025778001	TUB6	Tubulin beta-4 chain OS=Eleusine indica	0.05	OrthoFinder output from all 47 species
Gb_15590	TUB2	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from all 47 species
Gb_25332	TUB2	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	OrthoFinder output from all 47 species
LOC_Os03g01530.1	TUB8, LOC_Os03g01530	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from all 47 species
LOC_Os05g34170.2	TUB6, LOC_Os05g34170	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	OrthoFinder output from all 47 species
Len_g06832	TUB2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10431251g0010	TUB6	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.04	OrthoFinder output from all 47 species
MA_4935021g0010	TUB6	Tubulin beta-1 chain OS=Zea mays (sp\|p18025\|tbb1_maize : 189.0)	0.03	OrthoFinder output from all 47 species
MA_55439g0010	TUB2	Tubulin beta-1 chain OS=Solanum tuberosum...	0.02	OrthoFinder output from all 47 species
MA_79708g0010	TUB6	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	OrthoFinder output from all 47 species
MA_9578301g0010	TUB8	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.05	OrthoFinder output from all 47 species
Mp1g20730.1	TUB6	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from all 47 species
Mp2g16780.1	TUB6	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from all 47 species
Msp_g09508	TUB2	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.01	OrthoFinder output from all 47 species
Msp_g41363	TUB8	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Msp_g45769	TUB8	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ore_g40498	TUB8	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Pir_g03054	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Pp3c5_20340V3.1	TUB2, Pp3c5_20340	tubulin beta chain 2	0.04	OrthoFinder output from all 47 species
Ppi_g10734	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ppi_g22152	TUB2	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.01	OrthoFinder output from all 47 species
Ppi_g27529	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.01	OrthoFinder output from all 47 species
Ppi_g63060	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Sam_g16934	No alias	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Sam_g40899	No alias	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Smo164404	TUB6	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Smo23403	TUB2	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Smo23429	TUB2	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.05	OrthoFinder output from all 47 species
Smo402668	TUB8	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Smo410535	TUB2	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Solyc04g081490.3.1	TUB1, Solyc04g081490	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.08	OrthoFinder output from all 47 species
Spa_g15965	TUB6	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Tin_g06951	TUB2	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Tin_g19305	TUB7	beta-Tubulin component *(TUB) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Zm00001e011926_P001	TUB8, Zm00001e011926	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.09	OrthoFinder output from all 47 species
Zm00001e012336_P001	TUB8, Zm00001e012336	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	OrthoFinder output from all 47 species
Zm00001e019525_P002	TUB6, Zm00001e019525	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.05	OrthoFinder output from all 47 species
Zm00001e025464_P001	TUB6, Zm00001e025464	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from all 47 species
Zm00001e028896_P004	TUB6, Zm00001e028896	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.07	OrthoFinder output from all 47 species
Zm00001e037773_P002	TUB2, Zm00001e037773	component beta-Tubulin of alpha-beta-Tubulin heterodimer	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005200	structural constituent of cytoskeleton	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0045298	tubulin complex	ISS	Interproscan
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004758	serine C-palmitoyltransferase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006665	sphingolipid metabolic process	IEP	HCCA
BP	GO:0006670	sphingosine metabolic process	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009692	ethylene metabolic process	IEP	HCCA
BP	GO:0009693	ethylene biosynthetic process	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
MF	GO:0016408	C-acyltransferase activity	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016454	C-palmitoyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0030148	sphingolipid biosynthetic process	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
BP	GO:0043449	cellular alkene metabolic process	IEP	HCCA
BP	GO:0043450	alkene biosynthetic process	IEP	HCCA
MF	GO:0045309	protein phosphorylated amino acid binding	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046512	sphingosine biosynthetic process	IEP	HCCA
BP	GO:0046519	sphingoid metabolic process	IEP	HCCA
BP	GO:0046520	sphingoid biosynthetic process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
MF	GO:0051219	phosphoprotein binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071214	cellular response to abiotic stimulus	IEP	HCCA
BP	GO:0071258	cellular response to gravity	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
BP	GO:0104004	cellular response to environmental stimulus	IEP	HCCA
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	HCCA
BP	GO:0120252	hydrocarbon metabolic process	IEP	HCCA
BP	GO:0120254	olefinic compound metabolic process	IEP	HCCA
BP	GO:0120255	olefinic compound biosynthetic process	IEP	HCCA
BP	GO:1900673	olefin metabolic process	IEP	HCCA
BP	GO:1900674	olefin biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003008	Tubulin_FtsZ_GTPase	3	211
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	261	382

External Links

No external refs found!

AT5G44340 (TUB4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation