AT5G42700

Description : AP2/B3-like transcriptional factor family protein

Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G42700
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00115450	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Ala_g28493	No alias	REM-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Als_g15351	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g51859	No alias	REM-type transcription factor & original description: none	0.11	OrthoFinder output from all 47 species
Aop_g06897	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g25439	No alias	REM-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g36068	No alias	REM-type transcription factor & original description: none	0.12	OrthoFinder output from all 47 species
Aspi01Gene04981.t1	Aspi01Gene04981	REM-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene24779.t1	Aspi01Gene24779	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene24780.t1	Aspi01Gene24780	REM-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene54333.t1	Aspi01Gene54333	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene61918.t1	Aspi01Gene61918	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.02G084400.1	Ceric.02G084400	REM-type transcription factor & original description:...	0.09	OrthoFinder output from all 47 species
Ceric.07G043800.1	Ceric.07G043800	REM-type transcription factor & original description:...	0.12	OrthoFinder output from all 47 species
Ceric.14G017400.1	Ceric.14G017400	REM-type transcription factor & original description:...	0.11	OrthoFinder output from all 47 species
Ceric.35G050300.1	Ceric.35G050300	REM-type transcription factor & original description:...	0.09	OrthoFinder output from all 47 species
Dcu_g18248	No alias	REM-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g41437	No alias	REM-type transcription factor & original description: none	0.11	OrthoFinder output from all 47 species
Dcu_g43688	No alias	REM-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
GSVIVT01009519001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01031761001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.1	OrthoFinder output from all 47 species
Gb_35990	No alias	transcription factor (REM)	0.11	OrthoFinder output from all 47 species
LOC_Os03g08620.1	LOC_Os03g08620	transcription factor (REM)	0.06	OrthoFinder output from all 47 species
LOC_Os05g40280.1	LOC_Os05g40280	transcription factor (REM)	0.03	OrthoFinder output from all 47 species
Len_g01795	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Len_g55690	No alias	REM-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Len_g56640	No alias	REM-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g28691	No alias	REM-type transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Lfl_g29370	No alias	REM-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
MA_175090g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp2g08790.1	No alias	transcription factor (REM)	0.03	OrthoFinder output from all 47 species
Msp_g36795	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g08674	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g34487	No alias	REM-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g39771	No alias	REM-type transcription factor & original description: none	0.13	OrthoFinder output from all 47 species
Ore_g28568	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g01929	No alias	REM-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Ppi_g11582	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g11583	No alias	REM-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g14325	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g14471	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004736	No alias	REM-type transcription factor & original description: CDS=35-988	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018379	No alias	REM-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g48173	No alias	REM-type transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Smo424732	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	OrthoFinder output from all 47 species
Solyc04g079130.2.1	Solyc04g079130	transcription factor (REM)	0.04	OrthoFinder output from all 47 species
Spa_g03459	No alias	REM-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g49592	No alias	REM-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g56976	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Tin_g00720	No alias	REM-type transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Tin_g11017	No alias	REM-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Tin_g29854	No alias	REM-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Tin_g32723	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000624_P003	Zm00001e000624	transcription factor (REM)	0.12	OrthoFinder output from all 47 species
Zm00001e020584_P001	Zm00001e020584	transcription factor (REM)	0.02	OrthoFinder output from all 47 species
Zm00001e031956_P001	Zm00001e031956	transcription factor (REM)	0.03	OrthoFinder output from all 47 species
Zm00001e040028_P004	Zm00001e040028	transcription factor (REM)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0004034	aldose 1-epimerase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006012	galactose metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
BP	GO:0007088	regulation of mitotic nuclear division	IEP	HCCA
BP	GO:0007113	endomitotic cell cycle	IEP	HCCA
BP	GO:0007276	gamete generation	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0010374	stomatal complex development	IEP	HCCA
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
MF	GO:0019207	kinase regulator activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019887	protein kinase regulator activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032875	regulation of DNA endoreduplication	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0040020	regulation of meiotic nuclear division	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0051445	regulation of meiotic cell cycle	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0051783	regulation of nuclear division	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090329	regulation of DNA-templated DNA replication	IEP	HCCA
BP	GO:0090558	plant epidermis development	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1901987	regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1902749	regulation of cell cycle G2/M phase transition	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	110	198

External Links

No external refs found!

AT5G42700

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation