1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G42140

AT5G42140


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G42140

Target Alias Description ECC score Gene Family Method Actions
Adi_g014208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g14846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52568.t2 Aspi01Gene52568 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene54964.t1 Aspi01Gene54964 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65113.t1 Aspi01Gene65113 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65114.t1 Aspi01Gene65114 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene71481.t1 Aspi01Gene71481 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Mp1g24610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Pir_g18195 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021453 No alias not classified & original description: CDS=1695-2003 0.05 OrthoFinder output from all 47 species
Sam_g30101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo112120 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Tin_g04728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007456_P003 PRAF1, Zm00001e007456 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0007165 signal transduction ISS Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
MF GO:0035091 phosphatidylinositol binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006862 nucleotide transport IEP HCCA
BP GO:0006865 amino acid transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007009 plasma membrane organization IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009863 salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010150 leaf senescence IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015802 basic amino acid transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
CC GO:0034399 nuclear periphery IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043069 negative regulation of programmed cell death IEP HCCA
BP GO:0043090 amino acid import IEP HCCA
BP GO:0043269 regulation of monoatomic ion transport IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052482 defense response by cell wall thickening IEP HCCA
BP GO:0052542 defense response by callose deposition IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0052544 defense response by callose deposition in cell wall IEP HCCA
BP GO:0052545 callose localization IEP HCCA
BP GO:0060548 negative regulation of cell death IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090693 plant organ senescence IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 617 683
IPR013591 Brevis_radix_dom 998 1053
IPR000408 Reg_chr_condens 460 507
IPR000408 Reg_chr_condens 398 446
IPR000408 Reg_chr_condens 512 561
IPR000408 Reg_chr_condens 566 613
IPR000408 Reg_chr_condens 343 394
IPR000408 Reg_chr_condens 291 339
IPR001849 PH_domain 13 118
IPR027988 BRX_N 864 899
No external refs found!