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  5. AT5G41630

AT5G41630


Description : F-box/RNI-like superfamily protein


Gene families : OG0003469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G41630

Target Alias Description ECC score Gene Family Method Actions
AT1G47920 No alias RNI-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT1G48400 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT1G64540 No alias F-box/FBD-like domains containing protein 0.06 OrthoFinder output from all 47 species
AT2G29930 No alias F-box/RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT2G42720 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.05 OrthoFinder output from all 47 species
AT3G44060 No alias F-box/RNI-like superfamily protein 0.09 OrthoFinder output from all 47 species
AT3G44090 No alias F-box family protein 0.09 OrthoFinder output from all 47 species
AT3G44180 No alias syntaxin-related family protein 0.01 OrthoFinder output from all 47 species
AT3G49150 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G54160 No alias RNI-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G58860 No alias F-box/RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT3G58880 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G58920 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G58960 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from all 47 species
AT3G59160 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G59170 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G59230 No alias RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT3G59240 No alias RNI-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G59250 No alias F-box/RNI-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G59270 No alias FBD-like domain family protein 0.03 OrthoFinder output from all 47 species
AT3G62440 No alias F-box/RNI-like superfamily protein 0.09 OrthoFinder output from all 47 species
AT4G00320 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G13960 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G15620 No alias F-box/RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G25860 No alias F-box/RNI-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT5G35926 No alias Protein with RNI-like/FBD-like domains 0.05 OrthoFinder output from all 47 species
AT5G38396 No alias F-box/RNI-like superfamily protein 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013101 Leu-rich_rpt_2 176 200
IPR001810 F-box_dom 13 45
No external refs found!