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Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Gene families : OG0000738 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000738_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT5G41620 | |
| Cluster | HCCA: Cluster_13 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G46250 | No alias | myosin heavy chain-related | 0.01 | OrthoFinder output from all 47 species | |
| Aspi01Gene10833.t1 | Aspi01Gene10833 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g010430 | No alias | not classified & original description: CDS=1-2097 | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g03072 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01036076001 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g31400.1 | LOC_Os04g31400 | Uncharacterized protein At5g41620 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os07g12920.1 | LOC_Os07g12920 | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
| Mp3g08580.1 | No alias | Uncharacterized protein At5g41620 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g12075 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g26898 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g15943 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g30562 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g41596 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g51588 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g00750 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g26085 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g51597 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g07954 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g13347 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005737 | cytoplasm | ISM | Interproscan |
| CC | GO:0005886 | plasma membrane | IDA | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| CC | GO:0009507 | chloroplast | IDA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000419 | RNA polymerase V complex | IEP | HCCA |
| CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | HCCA |
| BP | GO:0000719 | photoreactive repair | IEP | HCCA |
| BP | GO:0002097 | tRNA wobble base modification | IEP | HCCA |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | HCCA |
| MF | GO:0003864 | 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | IEP | HCCA |
| MF | GO:0004360 | glutamine-fructose-6-phosphate transaminase (isomerizing) activity | IEP | HCCA |
| MF | GO:0004610 | phosphoacetylglucosamine mutase activity | IEP | HCCA |
| MF | GO:0004614 | phosphoglucomutase activity | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| BP | GO:0006040 | amino sugar metabolic process | IEP | HCCA |
| BP | GO:0006041 | glucosamine metabolic process | IEP | HCCA |
| BP | GO:0006042 | glucosamine biosynthetic process | IEP | HCCA |
| BP | GO:0006047 | UDP-N-acetylglucosamine metabolic process | IEP | HCCA |
| BP | GO:0006048 | UDP-N-acetylglucosamine biosynthetic process | IEP | HCCA |
| BP | GO:0006290 | pyrimidine dimer repair | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | HCCA |
| BP | GO:0006813 | potassium ion transport | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| BP | GO:0009225 | nucleotide-sugar metabolic process | IEP | HCCA |
| BP | GO:0009226 | nucleotide-sugar biosynthetic process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0010098 | suspensor development | IEP | HCCA |
| BP | GO:0010101 | post-embryonic root morphogenesis | IEP | HCCA |
| BP | GO:0010102 | lateral root morphogenesis | IEP | HCCA |
| MF | GO:0015112 | nitrate transmembrane transporter activity | IEP | HCCA |
| BP | GO:0015939 | pantothenate metabolic process | IEP | HCCA |
| BP | GO:0015940 | pantothenate biosynthetic process | IEP | HCCA |
| CC | GO:0016602 | CCAAT-binding factor complex | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | HCCA |
| MF | GO:0016868 | intramolecular transferase activity, phosphotransferases | IEP | HCCA |
| BP | GO:0019255 | glucose 1-phosphate metabolic process | IEP | HCCA |
| CC | GO:0030880 | RNA polymerase complex | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0043562 | cellular response to nitrogen levels | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046349 | amino sugar biosynthetic process | IEP | HCCA |
| CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | HCCA |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0070548 | L-glutamine aminotransferase activity | IEP | HCCA |
| MF | GO:0080054 | low-affinity nitrate transmembrane transporter activity | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901071 | glucosamine-containing compound metabolic process | IEP | HCCA |
| BP | GO:1901073 | glucosamine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |