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  5. AT5G41020

AT5G41020


Description : myb family transcription factor


Gene families : OG0003814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G41020
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Aop_g12801 No alias transcription termination factor *(TTF1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.38G041200.1 Ceric.38G041200 transcription termination factor *(TTF1) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g48895 No alias transcription termination factor *(TTF1) & original... 0.02 OrthoFinder output from all 47 species
Gb_06266 No alias transcription termination factor (TTF1). transcription... 0.03 OrthoFinder output from all 47 species
LOC_Os06g19980.1 LOC_Os06g19980 transcription termination factor (TTF1). transcription... 0.09 OrthoFinder output from all 47 species
MA_10431881g0010 No alias transcription termination factor (TTF1). transcription... 0.04 OrthoFinder output from all 47 species
Sam_g24190 No alias transcription termination factor *(TTF1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g24191 No alias transcription termination factor *(TTF1) & original... 0.02 OrthoFinder output from all 47 species
Solyc03g019800.4.1 Solyc03g019800 transcription termination factor (TTF1). transcription... 0.05 OrthoFinder output from all 47 species
Zm00001e021684_P001 Zm00001e021684 transcription termination factor (TTF1). transcription... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0001091 RNA polymerase II general transcription initiation factor binding IEP HCCA
MF GO:0001093 TFIIB-class transcription factor binding IEP HCCA
MF GO:0001098 basal transcription machinery binding IEP HCCA
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0010440 stomatal lineage progression IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0070063 RNA polymerase binding IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!