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  5. AT5G39350

AT5G39350


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G39350
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00244370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g05340... 0.02 OrthoFinder output from all 47 species
AT1G77150 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g005698 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g018648 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g109057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g126029 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20856 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12492 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g14758 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16809 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17028 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21063 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g35746 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18401 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18980 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26645 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30398 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g16806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02406.t1 Aspi01Gene02406 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15587.t1 DOT4, Aspi01Gene15587 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66850.t1 Aspi01Gene66850 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0301.g063681 REME1 not classified & original description: CDS=1-1416 0.02 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.01 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.01 OrthoFinder output from all 47 species
Cba_g07094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g32456 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g49960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76573 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G009700.1 VAC1, ECB2,... not classified & original description: pacid=50619980... 0.02 OrthoFinder output from all 47 species
Ceric.10G015400.1 CRR22, Ceric.10G015400 not classified & original description: pacid=50611867... 0.02 OrthoFinder output from all 47 species
Ceric.23G075300.1 Ceric.23G075300 not classified & original description: pacid=50609898... 0.03 OrthoFinder output from all 47 species
Dac_g05441 RARE1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38857 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g04006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04416 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15390 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17539 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21990 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36369 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g38127 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012461001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
GSVIVT01015466001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species
GSVIVT01023818001 CRR28 Pentatricopeptide repeat-containing protein At4g21065... 0.01 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.01 OrthoFinder output from all 47 species
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
LOC_Os03g63560.1 LOC_Os03g63560 OTP70 plastidial RNA splicing factor 0.01 OrthoFinder output from all 47 species
Len_g03881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18445 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g26141 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44793 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g06637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07436 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28067 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33296 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g41072 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_40517g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.01 OrthoFinder output from all 47 species
Msp_g31719 LOI1, MEF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g35200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g39832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23761 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02979 PTAC9, OSB2 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.02 OrthoFinder output from all 47 species
Ore_g07306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35928 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36349 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g32622 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19353 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13334 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g55749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012882 No alias not classified & original description: CDS=1-2733 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014697 OTP86 not classified & original description: CDS=1-2199 0.02 OrthoFinder output from all 47 species
Sam_g05175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17157 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36592 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37180 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g44584 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50214 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50768 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo105729 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.02 OrthoFinder output from all 47 species
Smo30095 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Smo98551 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.01 OrthoFinder output from all 47 species
Solyc11g071370.1.1 PDE247, CLB19,... RNA editing factor (CLB19) 0.02 OrthoFinder output from all 47 species
Spa_g07192 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04722 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09151 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17627 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27779 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g46233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000082 G1/S transition of mitotic cell cycle IEP HCCA
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0004737 pyruvate decarboxylase activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006638 neutral lipid metabolic process IEP HCCA
BP GO:0006639 acylglycerol metabolic process IEP HCCA
BP GO:0006651 diacylglycerol biosynthetic process IEP HCCA
MF GO:0008195 phosphatidate phosphatase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0010283 pinoresinol reductase activity IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016657 oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044770 cell cycle phase transition IEP HCCA
BP GO:0044772 mitotic cell cycle phase transition IEP HCCA
BP GO:0044843 cell cycle G1/S phase transition IEP HCCA
BP GO:0046339 diacylglycerol metabolic process IEP HCCA
BP GO:0046460 neutral lipid biosynthetic process IEP HCCA
BP GO:0046463 acylglycerol biosynthetic process IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 82 111
IPR002885 Pentatricopeptide_repeat 564 583
IPR002885 Pentatricopeptide_repeat 358 377
IPR002885 Pentatricopeptide_repeat 182 225
IPR002885 Pentatricopeptide_repeat 283 328
IPR002885 Pentatricopeptide_repeat 488 536
IPR002885 Pentatricopeptide_repeat 388 431
No external refs found!