AT5G37930

Description : Protein with RING/U-box and TRAF-like domains

Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G37930

Target	Alias	Description	ECC score	Gene Family Method
Ala_g11233	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g50728	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g29004	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01000648001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.01	OrthoFinder output from all 47 species
Len_g31151	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g06474	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g66313	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g12102	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008068	No alias	E3 ubiquitin ligase *(SINA) & original description: CDS=51-977	0.04	OrthoFinder output from all 47 species
Solyc01g096020.4.1	Solyc01g096020	SINA-class E3 ligase	0.02	OrthoFinder output from all 47 species
Tin_g03816	No alias	E3 ubiquiTin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e013546_P001	Zm00001e013546	SINA-class E3 ligase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	ISS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000813	ESCRT I complex	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0004629	phospholipase C activity	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
BP	GO:0030029	actin filament-based process	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
CC	GO:0036452	ESCRT complex	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018121	7-in-absentia-prot_TRAF-dom	155	234

External Links

No external refs found!

AT5G37930

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation