AT5G37770 (TCH2, CML24)

Aliases : TCH2, CML24

Description : EF hand calcium-binding protein family

Gene families : OG0000383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G37770

Target	Alias	Description	ECC score	Gene Family Method
Aev_g02825	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g03796	No alias	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g35874	No alias	calcium sensor *(CML) & original description: none	0.07	OrthoFinder output from all 47 species
Aev_g43414	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g43415	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11000	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g33679	TCH2, CML24	calcium sensor *(CML) & original description: none	0.09	OrthoFinder output from all 47 species
Als_g36096	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g00912	No alias	calcium sensor *(CML) & original description: none	0.07	OrthoFinder output from all 47 species
Aop_g00581	No alias	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene07767.t1	Aspi01Gene07767	calcium sensor *(CML) & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene07768.t1	Aspi01Gene07768	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene40089.t1	Aspi01Gene40089	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene67147.t1	Aspi01Gene67147	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g04492	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g37370	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.23G032100.1	Ceric.23G032100	calcium sensor *(CML) & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.33G026800.1	Ceric.33G026800	calcium sensor *(CML) & original description:...	0.09	OrthoFinder output from all 47 species
Dac_g07712	UNE14	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g00276	No alias	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g03528	No alias	calcium sensor *(CML) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g10743	No alias	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g14735	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g19027	No alias	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g27059	TCH2, CML24	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ehy_g30390	TCH2, CML24	not classified & original description: none	0.05	OrthoFinder output from all 47 species
LOC_Os01g72080.1	LOC_Os01g72080	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os01g72100.1	LOC_Os01g72100	Probable calcium-binding protein CML10 OS=Oryza sativa...	0.06	OrthoFinder output from all 47 species
LOC_Os05g13580.1	LOC_Os05g13580	Probable calcium-binding protein CML18 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
LOC_Os05g31620.1	LOC_Os05g31620	Probable calcium-binding protein CML15 OS=Oryza sativa...	0.06	OrthoFinder output from all 47 species
LOC_Os11g04560.1	LOC_Os11g04560	Probable calcium-binding protein CML36 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp5g15630.1	No alias	Probable calcium-binding protein CML10 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
Mp5g15820.1	No alias	Probable calcium-binding protein CML10 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Msp_g08069	No alias	calcium sensor *(CML) & original description: none	0.05	OrthoFinder output from all 47 species
Msp_g20815	No alias	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g01310	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g04785	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g35662	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g18745	CML41	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g01910	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g27721	No alias	calcium sensor *(CML) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g091500.1.1	Solyc02g091500	Calcium-binding protein CML24 OS=Arabidopsis thaliana...	0.13	OrthoFinder output from all 47 species
Solyc03g118810.1.1	Solyc03g118810	Calcium-binding allergen Ole e 8 OS=Olea europaea...	0.15	OrthoFinder output from all 47 species
Solyc10g079420.1.1	Solyc10g079420	Probable calcium-binding protein CML36 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc10g079755.1.1	Solyc10g079755	Probable calcium-binding protein CML36 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Spa_g09952	No alias	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g09953	No alias	calcium sensor *(CML) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g10112	No alias	calcium sensor *(CML) & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g14324	No alias	calcium sensor *(CML) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e018643_P001	Zm00001e018643	Probable calcium-binding protein CML10 OS=Oryza sativa...	0.06	OrthoFinder output from all 47 species
Zm00001e026863_P001	Zm00001e026863	Probable calcium-binding protein CML10 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	None	Extended
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IDA	Interproscan
MF	GO:0005509	calcium ion binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005856	cytoskeleton	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009408	response to heat	IEP	Interproscan
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009611	response to wounding	RCA	Interproscan
BP	GO:0009612	response to mechanical stimulus	IEP	Interproscan
BP	GO:0009612	response to mechanical stimulus	RCA	Interproscan
BP	GO:0009612	response to mechanical stimulus	TAS	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009646	response to absence of light	IEP	Interproscan
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEP	Interproscan
BP	GO:0009737	response to abscisic acid	IMP	Interproscan
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009909	regulation of flower development	IGI	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	IMP	Interproscan
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
CC	GO:0015629	actin cytoskeleton	IDA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042542	response to hydrogen peroxide	IEP	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	IMP	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0048571	long-day photoperiodism	None	Extended
BP	GO:0048573	photoperiodism, flowering	None	Extended
BP	GO:0048574	long-day photoperiodism, flowering	IMP	Interproscan
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051592	response to calcium ion	IEP	Interproscan
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080164	regulation of nitric oxide metabolic process	IGI	Interproscan
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005516	calmodulin binding	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0010337	regulation of salicylic acid metabolic process	IEP	HCCA
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
MF	GO:0050378	UDP-glucuronate 4-epimerase activity	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002048	EF_hand_dom	16	79
IPR002048	EF_hand_dom	94	156

External Links

No external refs found!

AT5G37770 (TCH2, CML24)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation