AT5G27945

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG0001302 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001302_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G27945
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
Aop_g02229	CDC20.2	substrate specificity component *(CDC20) of APC/C E3...	0.02	OrthoFinder output from all 47 species
Aspi01Gene35395.t1	CDC20.2, Aspi01Gene35395	substrate specificity component *(CDC20) of APC/C E3...	0.03	OrthoFinder output from all 47 species
Azfi_s0021.g015647	CDC20.2	substrate specificity component *(CDC20) of APC/C E3...	0.02	OrthoFinder output from all 47 species
Gb_04004	CDC20.2	Cell division cycle 20.2, cofactor of APC complex...	0.02	OrthoFinder output from all 47 species
LOC_Os04g51110.1	CDC20.1, LOC_Os04g51110	CDC20-type (APC/C)-dependent ubiquitination activator protein	0.01	OrthoFinder output from all 47 species
Pir_g11271	CDC20.2	substrate specificity component *(CDC20) of APC/C E3...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
CC	GO:0000152	nuclear ubiquitin ligase complex	None	Extended
MF	GO:0000166	nucleotide binding	ISS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005680	anaphase-promoting complex	ISS	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005834	heterotrimeric G-protein complex	ISS	Interproscan
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905360	GTPase complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR024977	Apc4_WD40_dom	146	205
IPR001680	WD40_repeat	229	264
IPR001680	WD40_repeat	365	400
IPR001680	WD40_repeat	275	315

External Links

No external refs found!